Variant report

Variant	rs1957542
Chromosome Location	chr14:81777303-81777304
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81770119..81773155-chr14:81775384..81778548,3	K562	blood:
2	chr14:81774681..81777617-chr14:81788208..81790373,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140022	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10138868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10141989	0.88[ASN][1000 genomes]
rs10142173	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10149489	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10873336	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626709	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11626733	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12146979	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12588160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12588234	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1885604	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1957543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1957544	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1957545	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1957548	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2146244	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2371574	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28501387	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28622938	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903976	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4903977	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903980	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55744181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574638	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6574639	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574640	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574641	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574642	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574643	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574645	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145964	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7146488	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7153097	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153538	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153613	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154309	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7155930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7156146	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7156251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160788	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8003051	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8006006	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8010545	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8021083	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs919378	0.90[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81743800-81778400	Weak transcription	Fetal Kidney	kidney
2	chr14:81754400-81777800	Weak transcription	Ovary	ovary
3	chr14:81756600-81777400	Weak transcription	Fetal Muscle Leg	muscle
4	chr14:81769400-81781000	Weak transcription	Psoas Muscle	Psoas
5	chr14:81770200-81777600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:81770200-81777800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr14:81770400-81777800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr14:81770400-81778200	Weak transcription	Esophagus	oesophagus
9	chr14:81770600-81778600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr14:81771000-81785400	Weak transcription	Fetal Intestine Large	intestine
11	chr14:81771800-81785200	Weak transcription	Fetal Intestine Small	intestine
12	chr14:81772400-81778400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr14:81773400-81777400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr14:81773600-81777600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr14:81773600-81790600	Weak transcription	K562	blood
16	chr14:81774200-81777800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr14:81774400-81777400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr14:81774400-81777600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr14:81774400-81777800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr14:81775600-81783000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr14:81776000-81783000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr14:81776200-81777400	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr14:81776400-81779000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr14:81776600-81777400	Enhancers	NHDF-Ad	bronchial
25	chr14:81776800-81777400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr14:81776800-81778000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr14:81776800-81779200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr14:81776800-81779400	Enhancers	HMEC	breast
29	chr14:81777000-81778800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr14:81777000-81779200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr14:81777000-81779600	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr14:81777000-81779600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr14:81777000-81779600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr14:81777200-81777600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
35	chr14:81777200-81777600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr14:81777200-81778000	Enhancers	NHEK	skin
37	chr14:81777200-81779200	Enhancers	Primary monocytes fromperipheralblood	blood
38	chr14:81777200-81780000	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr14:81777200-81781400	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr14:81777200-81781600	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr14:81777200-81783000	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr14:81777200-81784000	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr14:81777200-81784200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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