Variant report

Variant	rs1957548
Chromosome Location	chr14:81781835-81781836
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:81685596..81687723-chr14:81779481..81781884,2	MCF-7	breast:
2	chr14:81686550..81688217-chr14:81779859..81782471,2	K562	blood:
3	chr14:81779689..81782584-chr14:81913814..81916244,2	MCF-7	breast:
4	chr14:81780831..81784247-chr14:81787674..81790536,4	MCF-7	breast:
5	chr14:81684496..81687014-chr14:81780787..81782724,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165417	Chromatin interaction
ENSG00000140022	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10138868	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10141989	0.90[ASN][1000 genomes]
rs10142173	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10149489	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10873336	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11626709	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11626733	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12146979	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12588160	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12588234	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1885604	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1957542	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1957543	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1957544	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1957545	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2146244	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2371574	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28501387	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28622938	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4903976	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4903977	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4903979	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4903980	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55744181	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6574638	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6574639	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6574640	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6574641	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6574642	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6574643	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6574644	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6574645	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7145964	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7146488	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153097	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7153538	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7153613	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7154309	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155930	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7156146	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7156251	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7160788	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8003051	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8006006	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8010545	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8021083	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs919378	0.84[ASN][1000 genomes]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81771000-81785400	Weak transcription	Fetal Intestine Large	intestine
2	chr14:81771800-81785200	Weak transcription	Fetal Intestine Small	intestine
3	chr14:81773600-81790600	Weak transcription	K562	blood
4	chr14:81775600-81783000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:81776000-81783000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr14:81777200-81783000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr14:81777200-81784000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr14:81777200-81784200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr14:81777400-81783000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr14:81777600-81782800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr14:81778200-81782200	Enhancers	Fetal Brain Male	brain
12	chr14:81778400-81810800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr14:81778600-81782600	Weak transcription	Fetal Lung	lung
14	chr14:81778600-81783000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr14:81778600-81786000	Weak transcription	Stomach Mucosa	stomach
16	chr14:81778600-81786400	Weak transcription	Adipose Nuclei	Adipose
17	chr14:81778600-81789200	Weak transcription	Esophagus	oesophagus
18	chr14:81779000-81782800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr14:81779600-81782800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr14:81779600-81783600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr14:81779600-81787000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr14:81779600-81788200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr14:81779800-81782800	Enhancers	HMEC	breast
24	chr14:81779800-81783200	Enhancers	NHEK	skin
25	chr14:81780200-81782400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr14:81780200-81782800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr14:81780200-81784200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr14:81780400-81783000	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr14:81780400-81783000	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr14:81780400-81786400	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr14:81780600-81782600	Enhancers	Brain Substantia Nigra	brain
32	chr14:81780600-81790400	Weak transcription	Fetal Muscle Trunk	muscle
33	chr14:81780800-81782600	Enhancers	Fetal Muscle Leg	muscle
34	chr14:81780800-81783000	Enhancers	H9 Cell Line	embryonic stem cell
35	chr14:81780800-81783000	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr14:81780800-81783000	Enhancers	Fetal Kidney	kidney
37	chr14:81781000-81782000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr14:81781000-81782400	Enhancers	Brain Hippocampus Middle	brain
39	chr14:81781000-81783000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr14:81781000-81798400	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr14:81781200-81782000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr14:81781200-81782000	Enhancers	Spleen	Spleen
43	chr14:81781200-81782400	Enhancers	Brain Cingulate Gyrus	brain
44	chr14:81781200-81792400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr14:81781400-81782000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr14:81781400-81782800	Enhancers	Pancreatic Islets	Pancreatic Islet
47	chr14:81781400-81783000	Enhancers	Brain Anterior Caudate	brain
48	chr14:81781400-81783400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr14:81781600-81782000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr14:81781600-81782200	Enhancers	Psoas Muscle	Psoas

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