Variant report

Variant	rs7153538
Chromosome Location	chr14:81779507-81779508
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81685596..81687723-chr14:81779481..81781884,2	MCF-7	breast:
2	chr14:81778237..81779870-chr14:81783264..81785390,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165417	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10138868	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10141989	0.88[ASN][1000 genomes]
rs10142173	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10149489	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10873336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626709	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11626733	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12146979	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12588160	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12588234	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1885604	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1957542	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1957543	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1957544	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1957545	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1957548	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2146244	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2371574	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28501387	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28622938	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903976	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4903977	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903979	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903980	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55744181	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574638	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6574639	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574640	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574641	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574642	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574643	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145964	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7146488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7153097	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7155930	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7156146	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7156251	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8003051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8006006	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8010545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8021083	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs919378	0.85[ASN][1000 genomes]

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81769400-81781000	Weak transcription	Psoas Muscle	Psoas
2	chr14:81771000-81785400	Weak transcription	Fetal Intestine Large	intestine
3	chr14:81771800-81785200	Weak transcription	Fetal Intestine Small	intestine
4	chr14:81773600-81790600	Weak transcription	K562	blood
5	chr14:81775600-81783000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:81776000-81783000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr14:81777000-81779600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr14:81777000-81779600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr14:81777000-81779600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr14:81777200-81780000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr14:81777200-81781400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr14:81777200-81781600	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr14:81777200-81783000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr14:81777200-81784000	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr14:81777200-81784200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr14:81777400-81781200	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr14:81777400-81783000	Enhancers	H1 Cell Line	embryonic stem cell
18	chr14:81777600-81781400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr14:81777600-81782800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr14:81777800-81779600	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr14:81777800-81780400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr14:81778000-81781400	Enhancers	Fetal Brain Female	brain
23	chr14:81778200-81780800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr14:81778200-81782200	Enhancers	Fetal Brain Male	brain
25	chr14:81778400-81780200	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr14:81778400-81781000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr14:81778400-81810800	Weak transcription	Primary hematopoietic stem cells	blood
28	chr14:81778600-81779800	Flanking Active TSS	NHEK	skin
29	chr14:81778600-81780200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr14:81778600-81780200	Weak transcription	Pancreas	Pancrea
31	chr14:81778600-81780800	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr14:81778600-81781200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr14:81778600-81782600	Weak transcription	Fetal Lung	lung
34	chr14:81778600-81783000	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr14:81778600-81786000	Weak transcription	Stomach Mucosa	stomach
36	chr14:81778600-81786400	Weak transcription	Adipose Nuclei	Adipose
37	chr14:81778600-81789200	Weak transcription	Esophagus	oesophagus
38	chr14:81778800-81779600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr14:81778800-81780200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr14:81778800-81780400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr14:81778800-81780400	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr14:81778800-81780800	Weak transcription	Fetal Muscle Leg	muscle
43	chr14:81778800-81781200	Weak transcription	Spleen	Spleen
44	chr14:81779000-81780200	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr14:81779000-81780800	Weak transcription	Fetal Kidney	kidney
46	chr14:81779000-81781000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr14:81779000-81782800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr14:81779200-81779600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr14:81779200-81779800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr14:81779200-81780200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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