Variant report

Variant	rs12153396
Chromosome Location	chr5:75485855-75485856
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:75484578..75486755-chr5:75492728..75495660,2	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1002541	0.89[CHB][hapmap];0.84[CHD][hapmap]
rs10040232	0.89[CHB][hapmap];0.84[CHD][hapmap]
rs10064352	0.89[CHB][hapmap];0.84[CHD][hapmap]
rs10514060	0.90[CEU][hapmap];0.95[TSI][hapmap]
rs10514061	0.90[CEU][hapmap];0.95[TSI][hapmap]
rs10514062	0.89[CHB][hapmap];0.84[CHD][hapmap]
rs12188309	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12653182	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12655684	0.88[CHB][hapmap];1.00[MEX][hapmap]
rs12657109	0.80[ASN][1000 genomes]
rs12657276	0.89[CHB][hapmap];0.84[CHD][hapmap]
rs12659872	1.00[JPT][hapmap]
rs13155330	0.90[CEU][hapmap]
rs13164604	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13165397	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13166383	0.89[CEU][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13167138	0.80[CEU][hapmap];0.94[GIH][hapmap];1.00[TSI][hapmap]
rs13168590	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13170038	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs13179555	0.90[CEU][hapmap];0.94[GIH][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs13184915	0.90[CEU][hapmap]
rs13185101	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13186671	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13187212	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13189798	0.98[EUR][1000 genomes]
rs1393224	0.86[CHB][hapmap]
rs1423106	0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1423107	0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs17565925	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs17565946	0.89[CEU][hapmap]
rs17565960	0.90[CEU][hapmap]
rs17651014	0.90[CEU][hapmap]
rs17651079	0.90[CEU][hapmap]
rs17651269	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap]
rs17673879	0.81[CHD][hapmap]
rs17673963	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs17674301	0.90[CHD][hapmap];1.00[JPT][hapmap]
rs17746845	1.00[CHB][hapmap]
rs2055439	0.89[CHB][hapmap];0.84[CHD][hapmap]
rs2194177	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2358531	0.89[CHB][hapmap];0.84[CHD][hapmap]
rs28396489	0.98[EUR][1000 genomes]
rs2878766	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs34101768	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34513022	0.83[EUR][1000 genomes]
rs34637655	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34667328	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34715685	0.82[EUR][1000 genomes]
rs34851212	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34942575	0.83[EUR][1000 genomes]
rs34951990	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35273704	0.82[EUR][1000 genomes]
rs35411065	0.86[EUR][1000 genomes]
rs35634088	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6453208	0.84[CHD][hapmap]
rs67451909	0.82[EUR][1000 genomes]
rs67657625	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67940529	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6868505	0.89[CHB][hapmap];0.84[CHD][hapmap]
rs71630904	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71630905	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72773734	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72773753	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7711119	0.81[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1033350	chr5:75367809-75538460	Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1034853	chr5:75382047-75534981	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv462212	chr5:75388834-75534570	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv598676	chr5:75388834-75534570	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv526084	chr5:75410511-75530494	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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