Variant report

Variant	rs12189755
Chromosome Location	chr6:54973135-54973136
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10456692	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10456693	1.00[CEU][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10456694	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12189637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12190382	0.93[EUR][1000 genomes]
rs12191096	0.93[EUR][1000 genomes]
rs12191401	0.82[EUR][1000 genomes]
rs12198117	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12198516	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12198651	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12199547	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12205257	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12205790	0.80[EUR][1000 genomes]
rs12207408	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12209617	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12209620	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12209956	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12210357	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12211674	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12214372	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12215633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3006853	0.82[CEU][hapmap]
rs3105259	0.93[EUR][1000 genomes]
rs4451134	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73432958	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73432965	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73432967	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73436559	1.00[EUR][1000 genomes]
rs73438535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73438548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9475119	0.90[EUR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54966400-54973200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:54972600-54973800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:54972600-54974000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:54972800-54974800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:54973000-54973200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr6:54973000-54973200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:54973000-54973600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:54973000-54973800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr6:54973000-54974000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr6:54973000-54974000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:54973000-54974000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:54973000-54974000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr6:54973000-54974200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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