Variant report

Variant	rs9475119
Chromosome Location	chr6:54886893-54886894
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10456692	0.90[EUR][1000 genomes]
rs10456693	0.90[EUR][1000 genomes]
rs10456694	0.90[EUR][1000 genomes]
rs12189637	0.90[EUR][1000 genomes]
rs12189755	0.90[EUR][1000 genomes]
rs12190382	0.97[EUR][1000 genomes]
rs12191096	0.97[EUR][1000 genomes]
rs12191401	0.85[EUR][1000 genomes]
rs12198117	0.97[EUR][1000 genomes]
rs12198516	0.90[EUR][1000 genomes]
rs12198651	0.90[EUR][1000 genomes]
rs12199547	0.90[EUR][1000 genomes]
rs12205257	0.90[EUR][1000 genomes]
rs12207408	0.90[EUR][1000 genomes]
rs12209617	0.87[EUR][1000 genomes]
rs12209620	0.90[EUR][1000 genomes]
rs12209956	0.87[EUR][1000 genomes]
rs12210357	0.90[EUR][1000 genomes]
rs12211674	0.90[EUR][1000 genomes]
rs12214372	0.97[EUR][1000 genomes]
rs12215633	0.90[EUR][1000 genomes]
rs3105259	0.97[EUR][1000 genomes]
rs4451134	0.90[EUR][1000 genomes]
rs73432958	0.90[EUR][1000 genomes]
rs73432965	0.90[EUR][1000 genomes]
rs73432967	0.87[EUR][1000 genomes]
rs73436559	0.90[EUR][1000 genomes]
rs73438535	0.90[EUR][1000 genomes]
rs73438548	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364886	chr6:54880042-54912395	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
2	esv3368520	chr6:54881042-54905736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
3	nsv1033756	chr6:54881828-54944304	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538225	chr6:54881828-54944304	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54883800-54887800	Weak transcription	Primary hematopoietic stem cells	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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