Variant report

Variant	rs12211674
Chromosome Location	chr6:54898487-54898488
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10456692	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10456693	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10456694	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12189637	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12189755	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12190382	0.93[EUR][1000 genomes]
rs12191096	0.93[EUR][1000 genomes]
rs12191401	0.82[EUR][1000 genomes]
rs12198117	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12198516	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12198651	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12199547	0.87[EUR][1000 genomes]
rs12205257	0.87[EUR][1000 genomes]
rs12207408	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12209617	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12209620	0.87[EUR][1000 genomes]
rs12209956	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12210357	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12214372	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12215633	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3105259	0.93[EUR][1000 genomes]
rs4451134	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73432958	0.87[EUR][1000 genomes]
rs73432965	0.87[EUR][1000 genomes]
rs73432967	0.84[EUR][1000 genomes]
rs73436559	0.87[EUR][1000 genomes]
rs73438535	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73438548	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9475119	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364886	chr6:54880042-54912395	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
2	esv3368520	chr6:54881042-54905736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
3	nsv1033756	chr6:54881828-54944304	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538225	chr6:54881828-54944304	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54897800-54899600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:54897800-54900600	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr6:54897800-54900800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:54898000-54899000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:54898000-54900800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:54898400-54898800	Weak transcription	Primary monocytes fromperipheralblood	blood

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