Variant report

Variant	rs12198516
Chromosome Location	chr6:54965717-54965718
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10456692	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10456693	1.00[CEU][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10456694	0.85[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12189637	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12189755	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12190382	0.93[EUR][1000 genomes]
rs12191096	0.93[EUR][1000 genomes]
rs12191401	0.82[EUR][1000 genomes]
rs12198117	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12198651	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12199547	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12205257	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12205790	0.80[EUR][1000 genomes]
rs12207408	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12209617	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12209620	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12209956	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12210357	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12211674	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12214372	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12215633	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3006853	0.82[CEU][hapmap]
rs3105259	0.93[EUR][1000 genomes]
rs4451134	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73432958	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73432965	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73432967	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73436559	1.00[EUR][1000 genomes]
rs73438535	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73438548	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9475119	0.90[EUR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54964200-54965800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr6:54964600-54973000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:54965000-54971000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr6:54965200-54965800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr6:54965200-54966400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr6:54965400-54965800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr6:54965400-54971000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:54965600-54966400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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