Variant report

Variant	rs12209620
Chromosome Location	chr6:54994214-54994215
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10456692	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10456693	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10456694	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12189637	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12189755	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12190382	0.93[EUR][1000 genomes]
rs12191096	0.93[EUR][1000 genomes]
rs12191401	0.82[EUR][1000 genomes]
rs12198117	0.93[EUR][1000 genomes]
rs12198516	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12198651	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12199547	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12205257	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12207408	0.93[EUR][1000 genomes]
rs12209617	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12209956	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12210357	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12211674	0.87[EUR][1000 genomes]
rs12214372	0.93[EUR][1000 genomes]
rs12215633	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3105259	0.93[EUR][1000 genomes]
rs4451134	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73432958	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73432965	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73432967	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73436559	0.93[EUR][1000 genomes]
rs73438535	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73438548	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9475119	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033543	chr6:54978528-55000338	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54994000-54994400	Enhancers	Hela-S3	cervix

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