Variant report

Variant	rs12192345
Chromosome Location	chr6:30190151-30190152
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10947058	0.98[EUR][1000 genomes]
rs11753736	0.88[EUR][1000 genomes]
rs11758350	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13212414	0.80[EUR][1000 genomes]
rs13213365	0.80[EUR][1000 genomes]
rs13215307	0.84[EUR][1000 genomes]
rs16897204	0.84[EUR][1000 genomes]
rs2516722	0.93[EUR][1000 genomes]
rs34366388	0.84[EUR][1000 genomes]
rs6920344	0.84[EUR][1000 genomes]
rs6942037	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9295837	0.95[EUR][1000 genomes]
rs9501426	0.93[EUR][1000 genomes]
rs9501427	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884058	chr6:30182395-30202429	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30185400-30190400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:30187400-30191200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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