Variant report

Variant	rs11753736
Chromosome Location	chr6:30159266-30159267
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:30159246-30160851	GM12892	blood:	n/a	n/a
2	POLR2A	chr6:30159136-30160425	GM12892	blood:	n/a	n/a

Variant related genes	Relation type
PAIP1P1	TF binding region
TRIM26	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10947058	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758350	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12192345	0.88[EUR][1000 genomes]
rs12194485	0.83[EUR][1000 genomes]
rs12212092	1.00[ASN][1000 genomes]
rs1264622	1.00[ASN][1000 genomes]
rs13212414	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13213365	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13215307	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897204	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2516722	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2844753	1.00[ASN][1000 genomes]
rs34366388	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920344	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6942037	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs928824	1.00[ASN][1000 genomes]
rs9295837	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9501426	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9501427	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30145000-30173800	Weak transcription	Right Atrium	heart
2	chr6:30148000-30173000	Weak transcription	Fetal Heart	heart
3	chr6:30150200-30163400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr6:30150600-30179200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:30151600-30161400	Strong transcription	Primary T cells from cord blood	blood
6	chr6:30151800-30160400	Strong transcription	Thymus	Thymus
7	chr6:30151800-30160600	Strong transcription	Fetal Intestine Small	intestine
8	chr6:30151800-30170400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:30152000-30160200	Strong transcription	Fetal Brain Female	brain
10	chr6:30152000-30160200	Strong transcription	Sigmoid Colon	Sigmoid Colon
11	chr6:30152000-30160400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:30152000-30160600	Strong transcription	Fetal Muscle Leg	muscle
13	chr6:30152000-30160800	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr6:30152000-30166400	Strong transcription	Liver	Liver
15	chr6:30152000-30168000	Strong transcription	Fetal Intestine Large	intestine
16	chr6:30152000-30168200	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr6:30152000-30168200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:30152000-30168200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:30152000-30169000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:30152000-30170600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:30152000-30172400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:30152200-30159400	Strong transcription	Brain Inferior Temporal Lobe	brain
23	chr6:30152200-30159600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:30152200-30159800	Strong transcription	Primary B cells from cord blood	blood
25	chr6:30152200-30159800	Strong transcription	Fetal Thymus	thymus
26	chr6:30152200-30160200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr6:30152200-30160200	Strong transcription	Fetal Muscle Trunk	muscle
28	chr6:30152200-30160200	Strong transcription	Stomach Smooth Muscle	stomach
29	chr6:30152200-30160400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr6:30152200-30160400	Strong transcription	Fetal Stomach	stomach
31	chr6:30152200-30160600	Strong transcription	Brain Hippocampus Middle	brain
32	chr6:30152200-30167800	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr6:30152200-30167800	Strong transcription	Primary B cells from peripheral blood	blood
34	chr6:30152200-30168000	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr6:30152200-30168200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr6:30152200-30168200	Strong transcription	Duodenum Mucosa	Duodenum
37	chr6:30152200-30168600	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr6:30152200-30169000	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr6:30152400-30160200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:30152400-30160200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr6:30152400-30160200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr6:30152400-30160200	Strong transcription	Esophagus	oesophagus
43	chr6:30152400-30160200	Strong transcription	Lung	lung
44	chr6:30152400-30160200	Strong transcription	Spleen	Spleen
45	chr6:30152400-30160400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr6:30152400-30160400	Strong transcription	Placenta Amnion	Placenta Amnion
47	chr6:30152400-30161000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr6:30152400-30167200	Strong transcription	Primary neutrophils fromperipheralblood	blood
49	chr6:30152400-30168800	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr6:30152400-30169000	Strong transcription	Adipose Nuclei	Adipose

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