Variant report

Variant	rs13215307
Chromosome Location	chr6:30151954-30151955
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30146840..30149453-chr6:30151238..30153459,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10947058	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753736	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758350	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12192345	0.84[EUR][1000 genomes]
rs12194485	0.87[EUR][1000 genomes]
rs12202131	0.81[EUR][1000 genomes]
rs12212092	1.00[ASN][1000 genomes]
rs1264622	1.00[ASN][1000 genomes]
rs13212414	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13213365	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2516722	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2844753	1.00[ASN][1000 genomes]
rs34366388	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920344	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6942037	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs928824	1.00[ASN][1000 genomes]
rs9295837	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9501426	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9501427	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30139000-30152000	Weak transcription	Liver	Liver
2	chr6:30145000-30173800	Weak transcription	Right Atrium	heart
3	chr6:30147800-30152000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:30148000-30152000	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr6:30148000-30152000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:30148000-30152200	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr6:30148000-30152200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr6:30148000-30152600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:30148000-30155000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr6:30148000-30173000	Weak transcription	Fetal Heart	heart
11	chr6:30148200-30152000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:30148200-30152400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr6:30148200-30154800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr6:30148400-30154000	Weak transcription	HUVEC	blood vessel
15	chr6:30148800-30152000	Weak transcription	Brain Angular Gyrus	brain
16	chr6:30148800-30152200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:30149000-30152000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:30149000-30152200	Weak transcription	Primary B cells from cord blood	blood
19	chr6:30149000-30152400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr6:30149000-30152800	Weak transcription	Fetal Brain Male	brain
21	chr6:30149000-30156400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr6:30149200-30152200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr6:30149200-30152200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr6:30149200-30152400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr6:30149200-30152600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:30149200-30152600	Weak transcription	HMEC	breast
27	chr6:30149200-30157400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr6:30149400-30152000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:30149400-30152200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:30149400-30152400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:30149400-30152400	Weak transcription	Esophagus	oesophagus
32	chr6:30149400-30152600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr6:30149400-30152600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr6:30149400-30152600	Weak transcription	Left Ventricle	heart
35	chr6:30149400-30152600	Weak transcription	Ovary	ovary
36	chr6:30149400-30152800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr6:30149400-30153200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr6:30149400-30153400	Weak transcription	A549	lung
39	chr6:30149600-30152000	Weak transcription	Fetal Brain Female	brain
40	chr6:30149600-30152200	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr6:30149600-30152200	Weak transcription	Duodenum Mucosa	Duodenum
42	chr6:30149600-30152200	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr6:30149600-30152200	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr6:30149600-30152400	Weak transcription	GM12878-XiMat	blood
45	chr6:30149600-30152600	Weak transcription	Dnd41	blood
46	chr6:30149600-30153000	Weak transcription	Osteobl	bone
47	chr6:30149600-30155000	Weak transcription	NHEK	skin
48	chr6:30149800-30152000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr6:30149800-30152200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr6:30149800-30152200	Weak transcription	Brain Germinal Matrix	brain

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