Variant report

Variant	rs2844753
Chromosome Location	chr6:30248424-30248425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10947058	1.00[ASN][1000 genomes]
rs11753736	1.00[ASN][1000 genomes]
rs11758350	1.00[ASN][1000 genomes]
rs12212092	1.00[ASN][1000 genomes]
rs1264622	1.00[ASN][1000 genomes]
rs13212414	1.00[ASN][1000 genomes]
rs13213365	1.00[ASN][1000 genomes]
rs13215307	1.00[ASN][1000 genomes]
rs16897204	1.00[ASN][1000 genomes]
rs2516722	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34366388	1.00[ASN][1000 genomes]
rs6920344	1.00[ASN][1000 genomes]
rs6942037	1.00[ASN][1000 genomes]
rs928824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295837	1.00[ASN][1000 genomes]
rs9501426	1.00[ASN][1000 genomes]
rs9501427	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884061	chr6:30234627-30250450	Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv884062	chr6:30237454-30256838	ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30247400-30253000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:30247600-30262400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:30247800-30249000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
4	chr6:30247800-30249600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
5	chr6:30248400-30251600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
6	chr6:30248400-30253400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:30248400-30255600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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