Variant report

Variant	rs9295837
Chromosome Location	chr6:30184704-30184705
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:30182391..30184727-chr6:30190494..30193163,2	MCF-7	breast:
2	chr6:30172695..30175243-chr6:30183856..30185988,2	K562	blood:
3	chr6:30182772..30184809-chr6:30214077..30216863,2	K562	blood:
4	chr6:30068684..30075353-chr6:30179679..30184952,7	MCF-7	breast:
5	chr6:30178635..30184988-chr6:30292357..30296104,9	MCF-7	breast:
6	chr6:30175583..30179292-chr6:30184478..30187344,3	K562	blood:

Variant related genes	Relation type
ENSG00000204616	Chromatin interaction
ENSG00000204599	Chromatin interaction
ENSG00000270604	Chromatin interaction
ENSG00000231226	Chromatin interaction
ENSG00000231074	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10947058	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753736	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758350	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12192345	0.95[EUR][1000 genomes]
rs12212092	1.00[ASN][1000 genomes]
rs1264622	1.00[ASN][1000 genomes]
rs13212414	1.00[ASN][1000 genomes]
rs13213365	1.00[ASN][1000 genomes]
rs13215307	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897204	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2516722	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2844753	1.00[ASN][1000 genomes]
rs34366388	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920344	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6942037	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs928824	1.00[ASN][1000 genomes]
rs9501426	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9501427	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9501428	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884058	chr6:30182395-30202429	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9295837	HLA-H	cis	multi-tissue	Pritchard
rs9295837	IFI27	trans	lymphoblastoid	seeQTL

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30182600-30185600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr6:30182600-30186800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:30182600-30187000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr6:30182600-30187000	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr6:30182600-30187000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:30182600-30187000	Weak transcription	Brain Angular Gyrus	brain
7	chr6:30182600-30187000	Weak transcription	Fetal Thymus	thymus
8	chr6:30182600-30187200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:30182600-30187200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:30182600-30187200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:30182600-30187200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:30182600-30187200	Weak transcription	Adipose Nuclei	Adipose
13	chr6:30182600-30187200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:30182600-30187200	Weak transcription	Brain Hippocampus Middle	brain
15	chr6:30182600-30187200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:30182600-30187200	Weak transcription	Colon Smooth Muscle	Colon
17	chr6:30182600-30187200	Weak transcription	Stomach Mucosa	stomach
18	chr6:30182600-30189200	Weak transcription	Right Atrium	heart
19	chr6:30182800-30186400	Weak transcription	HepG2	liver
20	chr6:30182800-30186800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr6:30182800-30186800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr6:30182800-30186800	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr6:30182800-30187000	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr6:30182800-30187000	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr6:30182800-30187200	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr6:30182800-30187200	Weak transcription	Fetal Intestine Large	intestine
27	chr6:30182800-30187200	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr6:30183200-30186600	Weak transcription	Liver	Liver
29	chr6:30183200-30187000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr6:30184400-30185400	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr6:30184600-30184800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
32	chr6:30184600-30185200	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr6:30184600-30185600	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr6:30184600-30187200	Weak transcription	Primary B cells from peripheral blood	blood

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