Variant report

Variant	rs12196304
Chromosome Location	chr6:11924672-11924673
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11922189..11924916-chr6:12009286..12013032,3	K562	blood:
2	chr6:11922420..11924748-chr6:11934170..11937049,2	K562	blood:
3	chr6:11922871..11926216-chr6:11928261..11930855,3	K562	blood:
4	chr6:11917994..11921432-chr6:11923152..11925432,3	K562	blood:
5	chr6:11919510..11924906-chr6:11928261..11931879,6	K562	blood:
6	chr6:11923818..11925815-chr6:12024321..12026991,2	K562	blood:
7	chr6:11922704..11924727-chr6:12009251..12011603,2	K562	blood:
8	chr6:11922270..11924751-chr6:11942843..11945942,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10456449	0.93[ASN][1000 genomes]
rs12191778	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12194391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12199144	1.00[EUR][1000 genomes]
rs12201079	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12201333	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12203175	1.00[EUR][1000 genomes]
rs12207789	1.00[EUR][1000 genomes]
rs12209572	1.00[EUR][1000 genomes]
rs12211163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12213818	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12214146	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61708065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6903153	1.00[AMR][1000 genomes]
rs7753363	1.00[AMR][1000 genomes]
rs7775953	1.00[AMR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11918400-11927800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:11919400-11927600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:11919400-11927800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:11921600-11926000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:11921600-11926000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:11921600-11926200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:11921600-11926200	Weak transcription	Esophagus	oesophagus
8	chr6:11921600-11938600	Weak transcription	Right Atrium	heart
9	chr6:11921800-11930200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:11923400-11926200	Weak transcription	Pancreas	Pancrea
11	chr6:11923400-11929600	Weak transcription	Fetal Lung	lung
12	chr6:11924000-11929600	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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