Variant report

Variant	rs12201079
Chromosome Location	chr6:11932040-11932041
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11822139..11824301-chr6:11930699..11933415,2	K562	blood:
2	chr6:11928332..11933261-chr6:12008543..12013027,5	K562	blood:
3	chr6:11930465..11936991-chr6:11937118..11940104,9	K562	blood:
4	chr6:11930123..11933207-chr6:11933304..11936591,6	K562	blood:
5	chr6:11930827..11933254-chr6:12021729..12023432,3	K562	blood:
6	chr6:11930636..11932967-chr6:11944215..11946007,3	K562	blood:
7	chr6:11929988..11932730-chr6:12024858..12026839,2	K562	blood:
8	chr6:11930485..11933038-chr6:11977448..11980283,2	K562	blood:
9	chr6:11900471..11902675-chr6:11931742..11933826,2	K562	blood:
10	chr6:11930597..11932241-chr6:11988565..11991523,2	K562	blood:
11	chr6:11916810..11918568-chr6:11931723..11933958,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10456088	0.86[ASN][1000 genomes]
rs10456449	0.85[ASN][1000 genomes]
rs12191778	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12194391	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12196304	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12196906	1.00[EUR][1000 genomes]
rs12198183	0.86[ASN][1000 genomes]
rs12199144	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12201333	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12202320	0.86[ASN][1000 genomes]
rs12202388	0.86[ASN][1000 genomes]
rs12203175	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12207789	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12209572	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12211163	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12213818	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12214146	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28888496	0.86[ASN][1000 genomes]
rs61708065	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11921600-11938600	Weak transcription	Right Atrium	heart
2	chr6:11928400-11932800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:11931200-11932400	Flanking Active TSS	K562	blood
4	chr6:11932000-11932200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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