Variant report

Variant	rs12202388
Chromosome Location	chr6:11965719-11965720
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11870281..11872395-chr6:11964255..11966450,2	K562	blood:
2	chr6:11964811..11966583-chr6:11966966..11969534,2	MCF-7	breast:
3	chr6:11965258..11967128-chr6:12011147..12013128,2	K562	blood:
4	chr6:11965628..11968587-chr6:12011147..12013946,2	K562	blood:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10456088	1.00[ASN][1000 genomes]
rs10456449	1.00[CHB][hapmap]
rs12189667	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12190182	1.00[EUR][1000 genomes]
rs12190917	1.00[EUR][1000 genomes]
rs12191113	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12192522	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12196906	1.00[CHB][hapmap]
rs12198183	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12199144	0.88[ASN][1000 genomes]
rs12201079	0.86[ASN][1000 genomes]
rs12201333	0.87[ASN][1000 genomes]
rs12202320	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202981	1.00[EUR][1000 genomes]
rs12203175	0.92[ASN][1000 genomes]
rs12204035	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12205721	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12207789	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs12208282	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12209572	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs12210876	1.00[EUR][1000 genomes]
rs12211163	1.00[CHB][hapmap]
rs12212747	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12213062	0.89[CHB][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12213771	0.89[ASN][1000 genomes]
rs12216165	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs28489887	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28888496	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58002962	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60027663	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60683973	1.00[EUR][1000 genomes]
rs60765903	1.00[EUR][1000 genomes]
rs6939106	1.00[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11961200-11966200	Enhancers	K562	blood
2	chr6:11961400-11972600	Weak transcription	Lung	lung
3	chr6:11963600-11966600	Enhancers	Fetal Intestine Large	intestine
4	chr6:11964200-11969200	Weak transcription	Aorta	Aorta
5	chr6:11964600-11966400	Enhancers	Fetal Intestine Small	intestine
6	chr6:11964800-11966000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
7	chr6:11965000-11966000	Enhancers	H9 Cell Line	embryonic stem cell
8	chr6:11965200-11965800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr6:11965200-11965800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:11965200-11966000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr6:11965200-11966000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr6:11965400-11966000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:11965400-11966000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr6:11965400-11966000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:11965400-11966400	Bivalent Enhancer	HepG2	liver
16	chr6:11965600-11966000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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