Variant report

Variant	rs12205721
Chromosome Location	chr6:12030722-12030723
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12011378..12014751-chr6:12028988..12031345,3	MCF-7	breast:
2	chr6:12029801..12032269-chr6:12032604..12035769,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10456449	0.88[CHB][hapmap]
rs12189667	1.00[EUR][1000 genomes]
rs12190182	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12190917	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12191113	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12192522	1.00[EUR][1000 genomes]
rs12196906	0.88[CHB][hapmap]
rs12198183	1.00[EUR][1000 genomes]
rs12199764	1.00[ASN][1000 genomes]
rs12202320	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12202388	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12202981	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12204035	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12208282	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210876	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12211163	0.86[CHB][hapmap]
rs12212747	1.00[EUR][1000 genomes]
rs12213062	0.89[CHB][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes]
rs12216165	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs28489887	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28888496	1.00[EUR][1000 genomes]
rs57671359	1.00[ASN][1000 genomes]
rs58002962	1.00[EUR][1000 genomes]
rs60027663	1.00[EUR][1000 genomes]
rs60683973	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60765903	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6939106	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12013800-12033600	Weak transcription	Psoas Muscle	Psoas
2	chr6:12014000-12031800	Weak transcription	Brain Substantia Nigra	brain
3	chr6:12014600-12032000	Weak transcription	Brain Angular Gyrus	brain
4	chr6:12015400-12034000	Weak transcription	Hela-S3	cervix
5	chr6:12017800-12034200	Weak transcription	Fetal Kidney	kidney
6	chr6:12017800-12035000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr6:12017800-12040200	Weak transcription	Fetal Brain Male	brain
8	chr6:12018400-12039600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:12018600-12031400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:12018600-12049400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:12018600-12052000	Weak transcription	Thymus	Thymus
12	chr6:12019000-12034200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:12020800-12031400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:12020800-12031400	Weak transcription	Esophagus	oesophagus
15	chr6:12020800-12031400	Weak transcription	Lung	lung
16	chr6:12020800-12031600	Weak transcription	Placenta	Placenta
17	chr6:12020800-12034200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr6:12020800-12034600	Weak transcription	Right Ventricle	heart
19	chr6:12020800-12037400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr6:12020800-12039400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr6:12021000-12031400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:12021800-12031400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:12021800-12033600	Weak transcription	Spleen	Spleen
24	chr6:12021800-12034200	Weak transcription	Fetal Brain Female	brain
25	chr6:12022000-12031800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr6:12022000-12034000	Weak transcription	A549	lung
27	chr6:12022000-12037200	Weak transcription	Fetal Thymus	thymus
28	chr6:12022000-12037600	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr6:12023200-12031400	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr6:12023200-12031400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr6:12023200-12047800	Weak transcription	Fetal Muscle Trunk	muscle
32	chr6:12023400-12031200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr6:12023600-12034200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr6:12023600-12039200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr6:12024800-12033600	ZNF genes & repeats	GM12878-XiMat	blood
36	chr6:12025200-12034200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr6:12025400-12031200	Weak transcription	Fetal Stomach	stomach
38	chr6:12025400-12031400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr6:12025400-12031600	Weak transcription	Gastric	stomach
40	chr6:12025400-12033400	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr6:12025400-12034200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr6:12025400-12034200	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr6:12025600-12034200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr6:12025800-12031200	Weak transcription	HMEC	breast
45	chr6:12025800-12031400	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr6:12025800-12034600	Weak transcription	Stomach Mucosa	stomach
47	chr6:12026000-12031000	Weak transcription	NH-A	brain
48	chr6:12026000-12034600	Weak transcription	Rectal Smooth Muscle	rectum
49	chr6:12026000-12034800	Weak transcription	Aorta	Aorta
50	chr6:12026000-12044800	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links