Variant report

Variant	rs12189667
Chromosome Location	chr6:11977901-11977902
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10456088	0.85[ASN][1000 genomes]
rs12190182	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12190917	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12191113	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12192522	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12198183	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12202320	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12202388	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12202981	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12204035	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12205721	1.00[EUR][1000 genomes]
rs12208282	1.00[EUR][1000 genomes]
rs12210876	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12212747	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213062	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213771	0.95[ASN][1000 genomes]
rs12216165	1.00[EUR][1000 genomes]
rs28489887	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28888496	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58002962	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60027663	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60683973	1.00[EUR][1000 genomes]
rs60765903	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6939106	0.96[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11973200-11980200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:11975200-11978400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:11975200-11978400	Weak transcription	Hela-S3	cervix
4	chr6:11975400-11978600	Weak transcription	NH-A	brain
5	chr6:11975800-11979200	Enhancers	K562	blood
6	chr6:11976800-11978400	Weak transcription	Primary T cells from cord blood	blood
7	chr6:11976800-11978600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:11977000-11978600	Weak transcription	Primary B cells from cord blood	blood
9	chr6:11977000-11978600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr6:11977000-11978600	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr6:11977000-11978600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr6:11977200-11978400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:11977200-11978600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr6:11977400-11978400	Weak transcription	GM12878-XiMat	blood
15	chr6:11977600-11978600	Weak transcription	Stomach Mucosa	stomach
16	chr6:11977800-11978200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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