Variant report

Variant	rs12213062
Chromosome Location	chr6:11976286-11976287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11966269..11970218-chr6:11973328..11977432,3	K562	blood:
2	chr6:11974666..11976581-chr6:11977249..11978780,2	K562	blood:
3	chr6:11975763..11978241-chr6:12007588..12010164,2	MCF-7	breast:
4	chr6:11925920..11928166-chr6:11973706..11976576,2	K562	blood:
5	chr6:11970246..11972167-chr6:11973565..11976424,2	K562	blood:

Variant related genes	Relation type
ENSG00000229896	Chromatin interaction
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10456088	0.85[ASN][1000 genomes]
rs12189667	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190182	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12190917	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12191113	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12192522	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12198183	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12202320	0.90[CHB][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12202388	0.89[CHB][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12202981	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12204035	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12205721	0.89[CHB][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes]
rs12207789	0.90[CHB][hapmap]
rs12208282	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12209572	0.89[CHB][hapmap]
rs12210876	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12212747	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213771	0.95[ASN][1000 genomes]
rs12216165	1.00[EUR][1000 genomes]
rs28489887	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28888496	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58002962	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60027663	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60683973	1.00[EUR][1000 genomes]
rs60765903	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6939106	1.00[CHB][hapmap];0.86[JPT][hapmap];0.96[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11973200-11980200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:11975000-11976800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:11975000-11977200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:11975200-11977000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:11975200-11978400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:11975200-11978400	Weak transcription	Hela-S3	cervix
7	chr6:11975400-11977000	Enhancers	Primary B cells from cord blood	blood
8	chr6:11975400-11977000	Enhancers	Primary B cells from peripheral blood	blood
9	chr6:11975400-11977000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:11975400-11977200	Enhancers	Primary hematopoietic stem cells	blood
11	chr6:11975400-11978600	Weak transcription	NH-A	brain
12	chr6:11975600-11976400	Enhancers	Primary T cells fromperipheralblood	blood
13	chr6:11975600-11976400	Enhancers	HSMMtube	muscle
14	chr6:11975600-11977000	Enhancers	Fetal Thymus	thymus
15	chr6:11975800-11976400	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr6:11975800-11976400	Enhancers	Esophagus	oesophagus
17	chr6:11975800-11976400	Enhancers	Fetal Muscle Leg	muscle
18	chr6:11975800-11976800	Enhancers	Primary T cells from cord blood	blood
19	chr6:11975800-11976800	Enhancers	Thymus	Thymus
20	chr6:11975800-11976800	Enhancers	NHEK	skin
21	chr6:11975800-11977000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr6:11975800-11977000	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr6:11975800-11977400	Enhancers	GM12878-XiMat	blood
24	chr6:11975800-11979200	Enhancers	K562	blood
25	chr6:11976000-11976400	Enhancers	HSMM	muscle
26	chr6:11976000-11976400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
27	chr6:11976000-11976800	Enhancers	Duodenum Mucosa	Duodenum
28	chr6:11976000-11977000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr6:11976000-11977000	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr6:11976200-11976400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood

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