Variant report

Variant	rs12213771
Chromosome Location	chr6:11971555-11971556
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11970246..11972167-chr6:11973565..11976424,2	K562	blood:
2	chr6:11963924..11965600-chr6:11970597..11974776,3	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10456088	0.89[ASN][1000 genomes]
rs10456449	0.88[CHB][hapmap]
rs12111124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12189667	0.95[ASN][1000 genomes]
rs12190917	0.83[ASN][1000 genomes]
rs12191113	0.91[ASN][1000 genomes]
rs12192522	1.00[ASN][1000 genomes]
rs12196906	0.88[CHB][hapmap]
rs12198183	0.89[ASN][1000 genomes]
rs12202320	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12202388	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12202981	0.87[ASN][1000 genomes]
rs12203175	0.82[ASN][1000 genomes]
rs12204035	0.89[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12205721	1.00[JPT][hapmap]
rs12207789	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs12208282	1.00[JPT][hapmap]
rs12209572	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[ASN][1000 genomes]
rs12210876	0.83[ASN][1000 genomes]
rs12211163	0.88[CHB][hapmap];0.96[CHD][hapmap]
rs12212747	0.95[ASN][1000 genomes]
rs12213062	0.89[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs28489887	0.91[ASN][1000 genomes]
rs28888496	0.89[ASN][1000 genomes]
rs58002962	0.93[ASN][1000 genomes]
rs60027663	0.93[ASN][1000 genomes]
rs60765903	0.87[ASN][1000 genomes]
rs6939106	0.89[CHB][hapmap];0.93[JPT][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7767368	0.92[AFR][1000 genomes]
rs9296256	1.00[MEX][hapmap]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11961400-11972600	Weak transcription	Lung	lung
2	chr6:11966000-11972400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:11969400-11971600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:11969400-11972200	Weak transcription	GM12878-XiMat	blood
5	chr6:11969400-11974200	Weak transcription	NHEK	skin
6	chr6:11969400-11975400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:11969600-11972400	Weak transcription	Fetal Heart	heart
8	chr6:11969600-11972600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:11969600-11972600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:11969600-11975400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr6:11969600-11975800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:11969800-11971800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:11969800-11972400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:11969800-11972800	Weak transcription	Right Atrium	heart
15	chr6:11969800-11973200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:11969800-11975400	Enhancers	Osteobl	bone
17	chr6:11970200-11971600	Enhancers	HSMMtube	muscle
18	chr6:11970400-11975000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:11970400-11975400	Enhancers	NH-A	brain
20	chr6:11970600-11974400	Enhancers	NHDF-Ad	bronchial
21	chr6:11970800-11975200	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr6:11971000-11972000	Enhancers	HSMM	muscle
23	chr6:11971200-11972200	Enhancers	Muscle Satellite Cultured Cells	--
24	chr6:11971400-11972000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:11971400-11972200	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr6:11971400-11972200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:11971400-11973400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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