Variant report

Variant	rs12212747
Chromosome Location	chr6:11975769-11975770
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11966269..11970218-chr6:11973328..11977432,3	K562	blood:
2	chr6:11974666..11976581-chr6:11977249..11978780,2	K562	blood:
3	chr6:11975763..11978241-chr6:12007588..12010164,2	MCF-7	breast:
4	chr6:11925920..11928166-chr6:11973706..11976576,2	K562	blood:
5	chr6:11970246..11972167-chr6:11973565..11976424,2	K562	blood:

Variant related genes	Relation type
ENSG00000229896	Chromatin interaction
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10456088	0.85[ASN][1000 genomes]
rs12189667	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190182	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12190917	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12191113	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12192522	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12198183	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12202320	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12202388	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12202981	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12204035	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12205721	1.00[EUR][1000 genomes]
rs12208282	1.00[EUR][1000 genomes]
rs12210876	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12213062	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213771	0.95[ASN][1000 genomes]
rs12216165	1.00[EUR][1000 genomes]
rs28489887	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28888496	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58002962	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60027663	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60683973	1.00[EUR][1000 genomes]
rs60765903	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6939106	0.96[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11969600-11975800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:11973200-11980200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:11974600-11976000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:11974800-11975800	Weak transcription	NHEK	skin
5	chr6:11974800-11976000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:11975000-11976000	Weak transcription	HSMM	muscle
7	chr6:11975000-11976800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:11975000-11977200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:11975200-11975800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:11975200-11977000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr6:11975200-11978400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:11975200-11978400	Weak transcription	Hela-S3	cervix
13	chr6:11975400-11975800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
14	chr6:11975400-11976000	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr6:11975400-11977000	Enhancers	Primary B cells from cord blood	blood
16	chr6:11975400-11977000	Enhancers	Primary B cells from peripheral blood	blood
17	chr6:11975400-11977000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:11975400-11977200	Enhancers	Primary hematopoietic stem cells	blood
19	chr6:11975400-11978600	Weak transcription	NH-A	brain
20	chr6:11975600-11975800	Weak transcription	K562	blood
21	chr6:11975600-11976400	Enhancers	Primary T cells fromperipheralblood	blood
22	chr6:11975600-11976400	Enhancers	HSMMtube	muscle
23	chr6:11975600-11977000	Enhancers	Fetal Thymus	thymus

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