Variant report
| Variant | rs28888496 |
|---|---|
| Chromosome Location | chr6:11955347-11955348 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:6 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:11954299..11955841-chr6:12011068..12013010,2 | K562 | blood: | |
| 2 | chr6:11947439..11949235-chr6:11953867..11956602,2 | K562 | blood: | |
| 3 | chr6:11937988..11940263-chr6:11954946..11957643,2 | K562 | blood: | |
| 4 | chr6:11951766..11953426-chr6:11954045..11956144,3 | K562 | blood: | |
| 5 | chr6:11952838..11955991-chr6:12007401..12009737,3 | K562 | blood: | |
| 6 | chr6:11943872..11945567-chr6:11954478..11956491,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000229896 | Chromatin interaction |
| ENSG00000095951 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10456088 | 1.00[ASN][1000 genomes] |
| rs12189667 | 1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12190182 | 1.00[EUR][1000 genomes] |
| rs12190917 | 1.00[EUR][1000 genomes] |
| rs12191113 | 1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12192522 | 1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12198183 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12199144 | 0.88[ASN][1000 genomes] |
| rs12201079 | 0.86[ASN][1000 genomes] |
| rs12201333 | 0.87[ASN][1000 genomes] |
| rs12202320 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12202388 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12202981 | 1.00[EUR][1000 genomes] |
| rs12203175 | 0.92[ASN][1000 genomes] |
| rs12204035 | 1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12205721 | 1.00[EUR][1000 genomes] |
| rs12207789 | 0.92[ASN][1000 genomes] |
| rs12208282 | 1.00[EUR][1000 genomes] |
| rs12209572 | 0.92[ASN][1000 genomes] |
| rs12210876 | 1.00[EUR][1000 genomes] |
| rs12212747 | 1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12213062 | 1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12213771 | 0.89[ASN][1000 genomes] |
| rs12216165 | 1.00[EUR][1000 genomes] |
| rs28489887 | 1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs58002962 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs60027663 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs60683973 | 1.00[EUR][1000 genomes] |
| rs60765903 | 1.00[EUR][1000 genomes] |
| rs6939106 | 0.81[ASN][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:11954800-11955400 | Enhancers | K562 | blood |
