Variant report

Variant	rs57671359
Chromosome Location	chr6:12025167-12025168
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:12024355..12026993-chr6:12027535..12029252,2	MCF-7	breast:
2	chr6:12011120..12013823-chr6:12023572..12025777,2	MCF-7	breast:
3	chr6:12017880..12021749-chr6:12024798..12028599,4	MCF-7	breast:
4	chr6:11923818..11925815-chr6:12024321..12026991,2	K562	blood:
5	chr6:11929988..11932730-chr6:12024858..12026839,2	K562	blood:
6	chr6:12023578..12025547-chr6:12049523..12051378,2	K562	blood:
7	chr6:12021722..12024771-chr6:12025017..12026580,3	K562	blood:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

rs_ID	r²[population]
rs12190182	0.94[ASN][1000 genomes]
rs12190917	0.90[ASN][1000 genomes]
rs12191113	0.82[ASN][1000 genomes]
rs12199764	1.00[ASN][1000 genomes]
rs12202981	0.84[ASN][1000 genomes]
rs12204035	0.80[ASN][1000 genomes]
rs12205721	1.00[ASN][1000 genomes]
rs12208282	1.00[ASN][1000 genomes]
rs12210876	0.90[ASN][1000 genomes]
rs28489887	0.82[ASN][1000 genomes]
rs60683973	0.97[ASN][1000 genomes]
rs60765903	0.86[ASN][1000 genomes]
rs6939106	0.82[ASN][1000 genomes]

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12013800-12033600	Weak transcription	Psoas Muscle	Psoas
2	chr6:12014000-12031800	Weak transcription	Brain Substantia Nigra	brain
3	chr6:12014400-12030000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr6:12014600-12032000	Weak transcription	Brain Angular Gyrus	brain
5	chr6:12015400-12025400	Strong transcription	Liver	Liver
6	chr6:12015400-12029200	Weak transcription	Brain Anterior Caudate	brain
7	chr6:12015400-12034000	Weak transcription	Hela-S3	cervix
8	chr6:12017800-12027800	Weak transcription	Left Ventricle	heart
9	chr6:12017800-12029400	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr6:12017800-12034200	Weak transcription	Fetal Kidney	kidney
11	chr6:12017800-12035000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr6:12017800-12040200	Weak transcription	Fetal Brain Male	brain
13	chr6:12018400-12039600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:12018600-12026400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:12018600-12031400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:12018600-12049400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:12018600-12052000	Weak transcription	Thymus	Thymus
18	chr6:12018800-12030200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr6:12019000-12025200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr6:12019000-12034200	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr6:12019200-12025600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:12019400-12027000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr6:12019600-12028400	Weak transcription	Brain Germinal Matrix	brain
24	chr6:12020800-12026600	Weak transcription	HepG2	liver
25	chr6:12020800-12027800	Weak transcription	Pancreas	Pancrea
26	chr6:12020800-12031400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:12020800-12031400	Weak transcription	Esophagus	oesophagus
28	chr6:12020800-12031400	Weak transcription	Lung	lung
29	chr6:12020800-12031600	Weak transcription	Placenta	Placenta
30	chr6:12020800-12034200	Weak transcription	Duodenum Mucosa	Duodenum
31	chr6:12020800-12034600	Weak transcription	Right Ventricle	heart
32	chr6:12020800-12037400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr6:12020800-12039400	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr6:12021000-12026200	Weak transcription	Primary hematopoietic stem cells	blood
35	chr6:12021000-12028200	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr6:12021000-12028400	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr6:12021000-12031400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr6:12021600-12026200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr6:12021600-12026400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr6:12021600-12027600	Enhancers	Primary T cells from cord blood	blood
41	chr6:12021800-12026400	Weak transcription	Primary B cells from peripheral blood	blood
42	chr6:12021800-12026400	Weak transcription	Adipose Nuclei	Adipose
43	chr6:12021800-12031400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:12021800-12033600	Weak transcription	Spleen	Spleen
45	chr6:12021800-12034200	Weak transcription	Fetal Brain Female	brain
46	chr6:12022000-12026000	Weak transcription	Fetal Muscle Leg	muscle
47	chr6:12022000-12027400	Weak transcription	Primary B cells from cord blood	blood
48	chr6:12022000-12027400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr6:12022000-12027600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr6:12022000-12028200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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