Variant report

Variant	rs12198595
Chromosome Location	chr6:140330339-140330340
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10457036	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10457699	1.00[JPT][hapmap]
rs10457701	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10457702	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11155092	0.90[ASN][1000 genomes]
rs11155093	0.90[ASN][1000 genomes]
rs11155094	0.90[ASN][1000 genomes]
rs11155102	0.83[ASN][1000 genomes]
rs11754775	0.90[ASN][1000 genomes]
rs12193363	0.90[ASN][1000 genomes]
rs12193742	0.90[ASN][1000 genomes]
rs12194624	0.90[ASN][1000 genomes]
rs12194665	0.90[ASN][1000 genomes]
rs12198042	0.90[ASN][1000 genomes]
rs12198639	0.90[ASN][1000 genomes]
rs12198642	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12202850	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204229	0.90[ASN][1000 genomes]
rs12204306	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204849	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12205335	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12207470	0.90[ASN][1000 genomes]
rs12210493	1.00[ASN][1000 genomes]
rs12212554	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12214000	0.90[ASN][1000 genomes]
rs12214369	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12214414	0.90[ASN][1000 genomes]
rs12215417	0.90[ASN][1000 genomes]
rs12216315	0.90[ASN][1000 genomes]
rs169291	1.00[ASN][1000 genomes]
rs17516775	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs201284	0.93[ASN][1000 genomes]
rs201285	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2024678	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2064502	0.90[ASN][1000 genomes]
rs34059065	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72986764	0.90[ASN][1000 genomes]
rs72986775	1.00[ASN][1000 genomes]
rs9373254	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9376479	0.90[ASN][1000 genomes]
rs9484322	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9495596	1.00[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1019508	chr6:140317472-140434466	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140324800-140334000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:140324800-140338600	Weak transcription	Pancreas	Pancrea
3	chr6:140328000-140332600	Weak transcription	Ovary	ovary
4	chr6:140330000-140331200	Enhancers	Liver	Liver

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