Variant report

Variant	rs169291
Chromosome Location	chr6:140461008-140461009
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140426300..140428252-chr6:140459714..140462251,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10457036	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10457701	1.00[ASN][1000 genomes]
rs10457702	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10457704	0.84[EUR][1000 genomes]
rs10484713	0.88[EUR][1000 genomes]
rs11155093	0.90[ASN][1000 genomes]
rs11155094	0.90[ASN][1000 genomes]
rs11155102	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12194665	0.90[ASN][1000 genomes]
rs12198042	0.90[ASN][1000 genomes]
rs12198267	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12198595	1.00[ASN][1000 genomes]
rs12198639	0.90[ASN][1000 genomes]
rs12198642	0.90[ASN][1000 genomes]
rs12202850	1.00[ASN][1000 genomes]
rs12204229	0.90[ASN][1000 genomes]
rs12204306	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12204849	0.81[ASN][1000 genomes]
rs12204906	0.88[EUR][1000 genomes]
rs12205335	1.00[ASN][1000 genomes]
rs12206900	0.84[EUR][1000 genomes]
rs12206912	0.81[EUR][1000 genomes]
rs12210493	1.00[ASN][1000 genomes]
rs12210614	0.88[EUR][1000 genomes]
rs12212163	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12212554	1.00[ASN][1000 genomes]
rs12213758	0.84[EUR][1000 genomes]
rs17318	0.84[EUR][1000 genomes]
rs201284	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs201285	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34059065	1.00[ASN][1000 genomes]
rs72986775	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1022987	chr6:140344229-140463916	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv886693	chr6:140444057-140578494	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140457400-140461600	Strong transcription	Placenta	Placenta
2	chr6:140460200-140470800	Weak transcription	Right Atrium	heart
3	chr6:140460800-140461600	Strong transcription	K562	blood

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