Variant report

Variant	rs12213758
Chromosome Location	chr6:140667501-140667502
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10457704	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484713	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11155112	1.00[ASN][1000 genomes]
rs11155113	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs11155114	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12190624	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12194177	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12194447	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12198267	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202231	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12204906	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205549	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12206333	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12206900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206912	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209778	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12210614	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212163	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs169291	0.84[EUR][1000 genomes]
rs17318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17342193	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs201284	0.86[EUR][1000 genomes]
rs201285	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs72979885	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140660000-140670400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:140664400-140669400	Enhancers	HUVEC	blood vessel
3	chr6:140665000-140668000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:140665200-140668600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:140665200-140669000	Enhancers	NHLF	lung
6	chr6:140665400-140668000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:140665400-140668400	Enhancers	HSMM	muscle
8	chr6:140665600-140668800	Enhancers	HSMMtube	muscle
9	chr6:140666200-140667600	Weak transcription	NH-A	brain
10	chr6:140666200-140668200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:140666400-140668000	Enhancers	Fetal Kidney	kidney
12	chr6:140666600-140668200	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr6:140667000-140667800	Active TSS	Ovary	ovary
14	chr6:140667000-140667800	Weak transcription	Osteobl	bone
15	chr6:140667200-140667600	Enhancers	Fetal Heart	heart
16	chr6:140667200-140667800	Weak transcription	Colon Smooth Muscle	Colon
17	chr6:140667200-140668000	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr6:140667200-140668000	Enhancers	Fetal Brain Male	brain
19	chr6:140667200-140668200	Enhancers	Fetal Lung	lung
20	chr6:140667400-140667600	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr6:140667400-140668000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:140667400-140669000	Enhancers	Hela-S3	cervix

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