Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10457704	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484713	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11155112	1.00[ASN][1000 genomes]
rs11155113	0.86[ASN][1000 genomes]
rs11155114	0.93[ASN][1000 genomes]
rs12190624	0.93[ASN][1000 genomes]
rs12194177	0.93[ASN][1000 genomes]
rs12194447	0.93[ASN][1000 genomes]
rs12202231	0.93[ASN][1000 genomes]
rs12204906	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205549	0.93[ASN][1000 genomes]
rs12206333	1.00[ASN][1000 genomes]
rs12206900	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206912	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209778	0.93[ASN][1000 genomes]
rs12210614	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212163	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213758	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs169291	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs17318	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17342193	0.93[ASN][1000 genomes]
rs201284	0.92[EUR][1000 genomes]
rs201285	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140605600-140607200	Enhancers	HSMM	muscle
2	chr6:140605600-140607200	Enhancers	HSMMtube	muscle
3	chr6:140606200-140607000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:140606200-140607200	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr6:140606400-140606800	Enhancers	Fetal Heart	heart

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