Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10457704	1.00[ASN][1000 genomes]
rs10484713	1.00[ASN][1000 genomes]
rs11155112	1.00[ASN][1000 genomes]
rs11155113	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11155114	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12190624	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12194177	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12194447	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12198267	1.00[ASN][1000 genomes]
rs12202231	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12204906	1.00[ASN][1000 genomes]
rs12205549	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12206900	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12206912	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12209778	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12210614	1.00[ASN][1000 genomes]
rs12212163	1.00[ASN][1000 genomes]
rs12213758	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17318	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17342193	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv432965	chr6:140692307-140866307	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv604767	chr6:140701423-140816108	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv886694	chr6:140701423-141001420	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140706400-140727000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:140715400-140723000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:140722400-140723400	Enhancers	HMEC	breast
4	chr6:140722600-140723400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:140722600-140723400	Enhancers	NHDF-Ad	bronchial
6	chr6:140722600-140723400	Enhancers	NHEK	skin
7	chr6:140722600-140723600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:140722600-140723600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:140722600-140723600	Enhancers	HSMM	muscle
10	chr6:140722800-140723200	Enhancers	Osteobl	bone
11	chr6:140722800-140723400	Enhancers	Fetal Heart	heart

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