Variant report

Variant	rs17342193
Chromosome Location	chr6:140783205-140783206
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:140763859..140766809-chr6:140781953..140784173,2	MCF-7	breast:
2	chr6:140781738..140784199-chr6:140901701..140903255,2	MCF-7	breast:
3	chr6:140241965..140244669-chr6:140782881..140785815,2	MCF-7	breast:
4	chr6:140782673..140785251-chr6:140787404..140790151,3	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10457704	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10484713	0.93[ASN][1000 genomes]
rs11155112	0.93[ASN][1000 genomes]
rs11155113	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11155114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190624	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194177	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194447	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12198267	0.93[ASN][1000 genomes]
rs12202231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204906	0.93[ASN][1000 genomes]
rs12205549	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206333	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12206883	0.83[AFR][1000 genomes]
rs12206900	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12206912	0.93[ASN][1000 genomes]
rs12209778	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210614	0.93[ASN][1000 genomes]
rs12212163	0.93[ASN][1000 genomes]
rs12213758	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs13212274	0.83[AFR][1000 genomes]
rs17318	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs72979885	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv432965	chr6:140692307-140866307	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv604767	chr6:140701423-140816108	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv886694	chr6:140701423-141001420	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv524995	chr6:140733855-140801497	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1029179	chr6:140733884-141051309	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1030409	chr6:140768423-140819415	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1034251	chr6:140771199-140819415	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1021271	chr6:140779526-140849815	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1018932	chr6:140779526-140863146	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1021431	chr6:140779526-140865994	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv2763973	chr6:140779538-140863146	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv519374	chr6:140780603-140849702	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv604768	chr6:140780603-140856770	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140774200-140783400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:140779800-140784000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:140781400-140783800	Enhancers	Liver	Liver
4	chr6:140782000-140783400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr6:140782400-140783600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:140782400-140785200	Enhancers	NHLF	lung
7	chr6:140782400-140786000	Enhancers	NHDF-Ad	bronchial
8	chr6:140782600-140784800	Enhancers	Adipose Nuclei	Adipose
9	chr6:140782800-140784800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr6:140783000-140784000	Weak transcription	Ovary	ovary
11	chr6:140783000-140784800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr6:140783000-140785200	Enhancers	Osteobl	bone
13	chr6:140783000-140786200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:140783200-140783600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr6:140783200-140783800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:140783200-140784000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:140783200-140784000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:140783200-140784200	Enhancers	NHEK	skin
19	chr6:140783200-140784400	Enhancers	Hela-S3	cervix
20	chr6:140783200-140784400	Enhancers	HMEC	breast
21	chr6:140783200-140784800	Enhancers	Fetal Lung	lung
22	chr6:140783200-140785000	Enhancers	HSMMtube	muscle
23	chr6:140783200-140785200	Enhancers	HSMM	muscle
24	chr6:140783200-140785800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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