Variant report

Variant	rs10457704
Chromosome Location	chr6:140647329-140647330
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10484713	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11155112	1.00[ASN][1000 genomes]
rs11155113	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs11155114	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12190624	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12194177	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12194447	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12198267	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202231	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12204906	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205549	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12206333	1.00[ASN][1000 genomes]
rs12206900	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206912	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209778	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12210614	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212163	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213758	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs169291	0.84[EUR][1000 genomes]
rs17318	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17342193	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs201284	0.86[EUR][1000 genomes]
rs201285	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes]
rs72979885	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10457704	IL22RA2	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140641400-140658000	Weak transcription	K562	blood
2	chr6:140643200-140650800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:140647200-140647400	ZNF genes & repeats	Ovary	ovary
4	chr6:140647200-140647600	ZNF genes & repeats	Aorta	Aorta

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