Variant report

Variant	rs201285
Chromosome Location	chr6:140476088-140476089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:140475534..140478099-chr6:140479068..140483254,4	K562	blood:
2	chr20:48809431..48812147-chr6:140474358..140476603,2	MCF-7	breast:
3	chr6:140467252..140471466-chr6:140472412..140477060,5	K562	blood:
4	chr6:140473947..140477365-chr6:140478769..140481102,4	K562	blood:

Variant related genes	Relation type
ENSG00000252107	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10457036	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10457701	1.00[ASN][1000 genomes]
rs10457702	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10457704	0.86[EUR][1000 genomes]
rs10484713	0.90[EUR][1000 genomes]
rs11155102	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12198267	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12198595	1.00[ASN][1000 genomes]
rs12202850	1.00[ASN][1000 genomes]
rs12204306	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12204849	0.81[ASN][1000 genomes]
rs12204906	0.90[EUR][1000 genomes]
rs12205335	1.00[ASN][1000 genomes]
rs12206900	0.86[EUR][1000 genomes]
rs12206912	0.83[EUR][1000 genomes]
rs12210493	1.00[ASN][1000 genomes]
rs12210614	0.90[EUR][1000 genomes]
rs12212163	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs12212554	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12213758	0.86[EUR][1000 genomes]
rs169291	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17318	0.86[EUR][1000 genomes]
rs201284	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34059065	1.00[ASN][1000 genomes]
rs72986775	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv886693	chr6:140444057-140578494	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv1825718	chr6:140476088-140584384	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs201285	IL22RA2	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140471400-140479200	Weak transcription	Placenta	Placenta

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