Variant report

Variant	rs12202850
Chromosome Location	chr6:140319754-140319755
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10457036	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10457699	1.00[JPT][hapmap]
rs10457701	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10457702	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11155092	0.90[ASN][1000 genomes]
rs11155093	0.90[ASN][1000 genomes]
rs11155094	0.90[ASN][1000 genomes]
rs11155102	0.83[ASN][1000 genomes]
rs11754775	0.90[ASN][1000 genomes]
rs12193363	0.90[ASN][1000 genomes]
rs12193742	0.90[ASN][1000 genomes]
rs12194624	0.90[ASN][1000 genomes]
rs12194665	0.90[ASN][1000 genomes]
rs12198042	0.90[ASN][1000 genomes]
rs12198595	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12198639	0.90[ASN][1000 genomes]
rs12198642	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12204229	0.90[ASN][1000 genomes]
rs12204306	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12204849	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12205335	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12207470	0.90[ASN][1000 genomes]
rs12210493	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12212554	1.00[ASN][1000 genomes]
rs12214000	0.90[ASN][1000 genomes]
rs12214369	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12214414	0.90[ASN][1000 genomes]
rs12215417	0.90[ASN][1000 genomes]
rs12216315	0.90[ASN][1000 genomes]
rs169291	1.00[ASN][1000 genomes]
rs17516775	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs201284	0.93[ASN][1000 genomes]
rs201285	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2024678	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2064502	0.90[ASN][1000 genomes]
rs34059065	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72986764	0.90[ASN][1000 genomes]
rs72986775	1.00[ASN][1000 genomes]
rs9373254	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9376479	0.90[ASN][1000 genomes]
rs9484322	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9495596	1.00[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1019508	chr6:140317472-140434466	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140312600-140322200	Weak transcription	NHDF-Ad	bronchial
2	chr6:140312800-140322200	Weak transcription	NHLF	lung
3	chr6:140312800-140322600	Weak transcription	Ovary	ovary
4	chr6:140317800-140321000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:140317800-140321400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:140317800-140324000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:140318000-140322200	Weak transcription	Osteobl	bone
8	chr6:140318400-140322200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:140318400-140322800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:140318800-140322200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links