Variant report

Variant	rs12212163
Chromosome Location	chr6:140573526-140573527
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10457036	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs10457702	1.00[CEU][hapmap];0.80[AMR][1000 genomes]
rs10457704	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484713	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11155102	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11155112	1.00[ASN][1000 genomes]
rs11155113	0.86[ASN][1000 genomes]
rs12190624	0.93[ASN][1000 genomes]
rs12194177	0.93[ASN][1000 genomes]
rs12194447	0.93[ASN][1000 genomes]
rs12198267	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202231	0.93[ASN][1000 genomes]
rs12204906	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205549	0.93[ASN][1000 genomes]
rs12206333	1.00[ASN][1000 genomes]
rs12206900	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206912	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209778	0.93[ASN][1000 genomes]
rs12210614	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213758	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs169291	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17318	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17342193	0.93[ASN][1000 genomes]
rs201284	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs201285	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv886693	chr6:140444057-140578494	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv1825718	chr6:140476088-140584384	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140570400-140575600	Weak transcription	Placenta	Placenta
2	chr6:140573200-140573800	Strong transcription	K562	blood
3	chr6:140573400-140573800	Enhancers	NHDF-Ad	bronchial

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