Variant report

Variant	rs12208192
Chromosome Location	chr6:14871551-14871552
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:14862977..14865846-chr6:14871194..14873734,2	MCF-7	breast:
2	chr6:14870064..14872343-chr6:14875249..14877493,2	K562	blood:
3	chr6:14870368..14872279-chr6:14881525..14883346,2	K562	blood:
4	chr6:14870064..14873401-chr6:14874524..14877493,5	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10949262	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10949263	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12205478	0.87[ASN][1000 genomes]
rs12208540	0.82[EUR][1000 genomes]
rs1408254	0.85[EUR][1000 genomes]
rs1811899	0.90[ASN][1000 genomes]
rs365478	0.83[EUR][1000 genomes]
rs432263	0.82[EUR][1000 genomes]
rs438149	0.82[EUR][1000 genomes]
rs439819	0.83[EUR][1000 genomes]
rs447430	0.82[EUR][1000 genomes]
rs447503	0.80[EUR][1000 genomes]
rs453214	0.84[EUR][1000 genomes]
rs4712243	0.82[EUR][1000 genomes]
rs4715931	0.85[EUR][1000 genomes]
rs4715932	0.84[EUR][1000 genomes]
rs56397208	0.85[EUR][1000 genomes]
rs59644964	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6919301	0.84[EUR][1000 genomes]
rs6922300	0.85[EUR][1000 genomes]
rs6925263	0.82[EUR][1000 genomes]
rs6930513	0.82[EUR][1000 genomes]
rs7745963	0.85[EUR][1000 genomes]
rs7770504	0.84[EUR][1000 genomes]
rs837175	0.85[EUR][1000 genomes]
rs9800636	0.84[ASN][1000 genomes]
rs9800899	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1017572	chr6:14830510-14906933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14864800-14874600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr6:14864800-14880600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:14865000-14874400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:14866200-14875400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr6:14866400-14873000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr6:14866400-14873000	Weak transcription	Primary T cells from cord blood	blood
7	chr6:14866600-14872800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:14866600-14874400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:14866600-14874400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:14866600-14874600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:14866600-14880400	Weak transcription	Spleen	Spleen
12	chr6:14867000-14876600	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr6:14867400-14873400	Weak transcription	Primary B cells from cord blood	blood
14	chr6:14868000-14871600	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr6:14869400-14875400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:14869600-14875200	Enhancers	Fetal Thymus	thymus
17	chr6:14870000-14872000	Enhancers	Fetal Heart	heart
18	chr6:14870000-14872000	Enhancers	HSMMtube	muscle
19	chr6:14870600-14871600	Enhancers	HSMM	muscle
20	chr6:14870800-14871600	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr6:14870800-14872400	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr6:14870800-14872400	Weak transcription	Thymus	Thymus
23	chr6:14870800-14874200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:14870800-14874600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr6:14871000-14872400	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr6:14871000-14873000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr6:14871200-14871600	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr6:14871200-14871600	Enhancers	Fetal Muscle Leg	muscle
29	chr6:14871200-14871800	Enhancers	Psoas Muscle	Psoas
30	chr6:14871400-14872400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:14871400-14872400	Enhancers	Fetal Lung	lung
32	chr6:14871400-14873000	Enhancers	Left Ventricle	heart

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