Variant report

Variant	rs4715931
Chromosome Location	chr6:14897346-14897347
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DTNBP1-5	chr6:14897165-14897607	NONHSAT107859

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10949262	0.86[EUR][1000 genomes]
rs10949263	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12208192	0.85[EUR][1000 genomes]
rs12208540	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1408254	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1811899	0.84[ASN][1000 genomes]
rs2876374	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs364915	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs365478	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs376065	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs392144	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs398646	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs399269	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs417572	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs428210	0.93[ASN][1000 genomes]
rs429112	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs432263	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs434548	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs438149	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs439819	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs446745	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs447430	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs447503	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs449640	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs451541	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs453214	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs453764	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4712243	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4715932	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56328912	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56397208	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59644964	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6919301	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6922300	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6925263	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6930513	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7745963	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7770504	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs837175	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs837181	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs863909	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs94860	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1017572	chr6:14830510-14906933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14890800-14897800	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr6:14894400-14912400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:14894400-14915800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:14896400-14899200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr6:14896800-14898000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr6:14897000-14898800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:14897200-14898000	Weak transcription	Stomach Mucosa	stomach
8	chr6:14897200-14898200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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