Variant report

Variant	rs59644964
Chromosome Location	chr6:14887547-14887548
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:14886333..14888051-chr6:14888105..14890290,2	MCF-7	breast:
2	chr6:14872119..14873889-chr6:14887014..14889043,2	K562	blood:
3	chr6:14886246..14888120-chr6:15244325..15247107,2	MCF-7	breast:
4	chr6:14878630..14881043-chr6:14886019..14889778,3	K562	blood:
5	chr6:14887062..14891026-chr6:15088768..15091846,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000234261	Chromatin interaction
ENSG00000271888	Chromatin interaction
ENSG00000008083	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10949262	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10949263	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12208192	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12208540	0.91[EUR][1000 genomes]
rs1408254	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1811899	0.99[ASN][1000 genomes]
rs2876374	0.85[EUR][1000 genomes]
rs364915	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs365478	0.91[EUR][1000 genomes]
rs376065	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs392144	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs399269	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs417572	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs429112	0.84[EUR][1000 genomes]
rs432263	0.90[EUR][1000 genomes]
rs434548	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs438149	0.90[EUR][1000 genomes]
rs439819	0.92[EUR][1000 genomes]
rs446745	0.88[EUR][1000 genomes]
rs447430	0.90[EUR][1000 genomes]
rs447503	0.90[EUR][1000 genomes]
rs449640	0.82[EUR][1000 genomes]
rs451541	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs453214	0.93[EUR][1000 genomes]
rs453764	0.87[EUR][1000 genomes]
rs4712243	0.91[EUR][1000 genomes]
rs4715931	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4715932	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56397208	0.95[EUR][1000 genomes]
rs6919301	0.92[EUR][1000 genomes]
rs6922300	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6925263	0.91[EUR][1000 genomes]
rs6930513	0.91[EUR][1000 genomes]
rs7745963	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7770504	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs837175	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs837181	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs863909	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs94860	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1017572	chr6:14830510-14906933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14877400-14889000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:14880800-14889000	Weak transcription	Spleen	Spleen
3	chr6:14881600-14888800	Weak transcription	A549	lung
4	chr6:14883200-14888400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:14883200-14888400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:14883200-14889200	Weak transcription	Small Intestine	intestine
7	chr6:14883600-14889000	Weak transcription	Stomach Mucosa	stomach
8	chr6:14883800-14888800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:14884600-14887600	Weak transcription	Psoas Muscle	Psoas
10	chr6:14884600-14889800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:14884800-14887800	Weak transcription	Left Ventricle	heart
12	chr6:14884800-14888200	Weak transcription	Adipose Nuclei	Adipose
13	chr6:14884800-14888200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:14884800-14890000	Weak transcription	K562	blood
15	chr6:14884800-14891600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:14884800-14892800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr6:14884800-14893800	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr6:14885200-14893400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr6:14885200-14893600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:14886000-14890400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:14886200-14887800	Weak transcription	Right Atrium	heart
22	chr6:14886200-14888600	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr6:14886200-14889000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:14886600-14888400	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr6:14886600-14888400	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr6:14887000-14889800	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr6:14887200-14889200	Enhancers	Right Ventricle	heart

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