Variant report

Variant	rs439819
Chromosome Location	chr6:14912686-14912687
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10949262	0.87[CEU][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes]
rs10949263	0.92[EUR][1000 genomes]
rs12208192	0.83[EUR][1000 genomes]
rs12208540	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1408254	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2327866	0.82[ASN][1000 genomes]
rs2876374	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs364915	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs365478	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs376065	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs392144	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs398646	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs399269	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs417572	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs428210	0.90[ASN][1000 genomes]
rs429112	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs432263	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs434548	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs438149	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs446745	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs447430	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs447503	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs449640	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs451541	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs453214	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs453764	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4712243	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4715931	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4715932	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56328912	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56397208	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59644964	0.92[EUR][1000 genomes]
rs6919301	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6922300	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6925263	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6930513	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7745963	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7770504	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs837175	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs837181	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs863909	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs94860	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14894400-14915800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:14902600-14921400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:14905800-14924800	Weak transcription	Esophagus	oesophagus
4	chr6:14909200-14913200	Weak transcription	Small Intestine	intestine
5	chr6:14909400-14913600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:14910200-14912800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:14910200-14913400	Enhancers	Primary B cells from peripheral blood	blood
8	chr6:14910400-14912800	Enhancers	Spleen	Spleen
9	chr6:14910400-14913000	Enhancers	Fetal Thymus	thymus
10	chr6:14910400-14913200	Enhancers	K562	blood
11	chr6:14910400-14913400	Enhancers	Thymus	Thymus
12	chr6:14910600-14913200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:14911400-14913200	ZNF genes & repeats	GM12878-XiMat	blood
14	chr6:14911400-14913400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:14911400-14916400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:14911600-14912800	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr6:14911600-14913400	Enhancers	Primary B cells from cord blood	blood
18	chr6:14911600-14913400	Enhancers	Colon Smooth Muscle	Colon
19	chr6:14911800-14912800	Enhancers	Adipose Nuclei	Adipose
20	chr6:14911800-14913000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr6:14911800-14913200	Enhancers	Duodenum Mucosa	Duodenum
22	chr6:14911800-14913600	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr6:14912000-14913200	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr6:14912000-14913200	Enhancers	Fetal Kidney	kidney
25	chr6:14912000-14913400	Enhancers	Placenta	Placenta
26	chr6:14912000-14914000	Enhancers	Fetal Stomach	stomach
27	chr6:14912200-14912800	Weak transcription	Right Atrium	heart
28	chr6:14912200-14913600	Enhancers	Rectal Smooth Muscle	rectum
29	chr6:14912400-14912800	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr6:14912400-14913000	Enhancers	H9 Cell Line	embryonic stem cell
31	chr6:14912400-14913000	Enhancers	Stomach Mucosa	stomach
32	chr6:14912400-14913400	Enhancers	Pancreas	Pancrea
33	chr6:14912400-14914000	Enhancers	Ovary	ovary
34	chr6:14912600-14912800	Enhancers	H1 Cell Line	embryonic stem cell
35	chr6:14912600-14912800	Enhancers	Fetal Muscle Trunk	muscle
36	chr6:14912600-14912800	Flanking Active TSS	Gastric	stomach
37	chr6:14912600-14913800	Enhancers	HUES6 Cell Line	embryonic stem cell

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