Variant report

Variant	rs12211506
Chromosome Location	chr6:11762311-11762312
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11761684..11763323-chr6:12010359..12013235,2	K562	blood:
2	chr6:11760325..11763713-chr6:11770760..11773174,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12189748	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12198491	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs210925	0.85[CHB][hapmap]
rs2235396	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2235397	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];1.00[ASN][1000 genomes]
rs2235411	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4140558	0.88[ASW][hapmap];0.96[LWK][hapmap];0.84[AFR][1000 genomes]
rs4713852	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6457825	0.85[CHB][hapmap]
rs6908760	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6911562	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6938865	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9348976	0.82[MKK][hapmap]
rs9368866	0.85[CHB][hapmap]
rs9380503	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9394295	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.97[ASN][1000 genomes]
rs9462058	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9469947	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs9469963	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12211506	C6orf105	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11753200-11763800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:11755800-11768400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:11758600-11762400	Weak transcription	Spleen	Spleen
4	chr6:11759000-11765800	Enhancers	Fetal Intestine Large	intestine
5	chr6:11759200-11764400	Enhancers	Stomach Mucosa	stomach
6	chr6:11759200-11765600	Enhancers	Fetal Intestine Small	intestine
7	chr6:11759400-11763600	Weak transcription	Esophagus	oesophagus
8	chr6:11759400-11769600	Weak transcription	Lung	lung
9	chr6:11759600-11762600	Weak transcription	A549	lung
10	chr6:11759600-11763400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:11759600-11765000	Enhancers	Duodenum Mucosa	Duodenum
12	chr6:11759600-11765800	Weak transcription	Hela-S3	cervix
13	chr6:11759800-11764400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr6:11760000-11763400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:11760400-11762400	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr6:11760400-11765800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:11760600-11762400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:11760600-11762800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr6:11760600-11763600	Weak transcription	Ovary	ovary
20	chr6:11760600-11763600	Weak transcription	Right Atrium	heart
21	chr6:11760600-11766000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr6:11760600-11770600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:11760800-11763600	Weak transcription	Small Intestine	intestine
24	chr6:11761000-11762600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:11761000-11763200	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr6:11761400-11762800	Enhancers	Rectal Mucosa Donor 29	rectum
27	chr6:11761600-11765800	Weak transcription	K562	blood
28	chr6:11762000-11762600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr6:11762000-11762600	Enhancers	Gastric	stomach
30	chr6:11762000-11762600	Enhancers	HMEC	breast
31	chr6:11762000-11762800	Enhancers	Pancreas	Pancrea
32	chr6:11762000-11764400	Enhancers	NHEK	skin
33	chr6:11762000-11764600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:11762000-11767200	Enhancers	HSMMtube	muscle
35	chr6:11762200-11762400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr6:11762200-11762600	Enhancers	Colonic Mucosa	Colon
37	chr6:11762200-11763600	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr6:11762200-11763800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr6:11762200-11764000	Enhancers	Fetal Kidney	kidney
40	chr6:11762200-11764400	Enhancers	Placenta Amnion	Placenta Amnion
41	chr6:11762200-11764600	Enhancers	Fetal Lung	lung
42	chr6:11762200-11764600	Enhancers	NH-A	brain

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