Variant report

Variant	rs6457825
Chromosome Location	chr6:11767620-11767621
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:11766238-11768174	HUVEC	blood vessel:	n/a	n/a
2	RPC155	chr6:11766989-11767802	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr6:11766697-11768064	HUVEC	blood vessel:	n/a	n/a
4	POLR2A	chr6:11766748-11767940	HUVEC	blood vessel:	n/a	n/a
5	POLR2A	chr6:11766079-11767914	IMR90	lung:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:11766544..11768808-chr6:12011516..12013304,2	MCF-7	breast:
2	chr6:11766846..11771135-chr6:12008831..12011747,3	K562	blood:
3	chr6:11767330..11770016-chr6:11806756..11808382,2	MCF-7	breast:
4	chr6:11766943..11769804-chr6:12011580..12013984,2	MCF-7	breast:

No data

Variant related genes	Relation type
ADTRP	TF binding region
ENSG00000095951	Chromatin interaction
ENSG00000111863	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12189748	0.85[CHB][hapmap]
rs12198491	0.85[CHB][hapmap]
rs12211506	0.85[CHB][hapmap]
rs210925	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs2235396	0.85[CHB][hapmap]
rs2235397	0.85[CHB][hapmap]
rs2235411	0.85[CHB][hapmap]
rs4713852	0.85[CHB][hapmap]
rs6908760	0.85[CHB][hapmap]
rs6911562	0.85[CHB][hapmap]
rs6938865	0.85[CHB][hapmap]
rs9368866	1.00[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs9380503	0.85[CHB][hapmap]
rs9394295	0.85[CHB][hapmap]
rs9462058	0.85[CHB][hapmap]
rs9469947	0.82[CHB][hapmap]
rs9469963	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11755800-11768400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:11759400-11769600	Weak transcription	Lung	lung
3	chr6:11760600-11770600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:11762400-11768200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:11762600-11770600	Weak transcription	Spleen	Spleen
6	chr6:11763000-11768000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:11763000-11769200	Weak transcription	Colonic Mucosa	Colon
8	chr6:11763200-11773400	Enhancers	HUVEC	blood vessel
9	chr6:11764400-11770600	Weak transcription	Esophagus	oesophagus
10	chr6:11764400-11770600	Weak transcription	Left Ventricle	heart
11	chr6:11764400-11770600	Weak transcription	Right Atrium	heart
12	chr6:11764800-11769600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:11764800-11769600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:11765000-11769000	Weak transcription	Small Intestine	intestine
15	chr6:11765000-11770600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:11765200-11767800	Enhancers	NHEK	skin
17	chr6:11765200-11768200	Strong transcription	Rectal Mucosa Donor 31	rectum
18	chr6:11765400-11768400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:11765600-11768200	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr6:11765800-11767800	Enhancers	K562	blood
21	chr6:11765800-11768000	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr6:11765800-11768000	Enhancers	H1 Cell Line	embryonic stem cell
23	chr6:11765800-11768000	Enhancers	H9 Cell Line	embryonic stem cell
24	chr6:11765800-11768000	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr6:11765800-11768000	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr6:11765800-11768200	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr6:11765800-11768200	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr6:11765800-11768400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:11765800-11768400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr6:11765800-11770200	Enhancers	Hela-S3	cervix
31	chr6:11765800-11770600	Enhancers	HSMM	muscle
32	chr6:11765800-11770600	Enhancers	Osteobl	bone
33	chr6:11765800-11773000	Enhancers	NH-A	brain
34	chr6:11765800-11773600	Enhancers	NHDF-Ad	bronchial
35	chr6:11765800-11773600	Enhancers	NHLF	lung
36	chr6:11766000-11767800	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr6:11766000-11768200	Enhancers	HMEC	breast
38	chr6:11766000-11770800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr6:11766200-11767800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr6:11766200-11767800	Enhancers	Placenta Amnion	Placenta Amnion
41	chr6:11766200-11768000	Enhancers	Aorta	Aorta
42	chr6:11766200-11768000	Enhancers	Colon Smooth Muscle	Colon
43	chr6:11766200-11768000	Enhancers	Stomach Smooth Muscle	stomach
44	chr6:11766200-11770800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr6:11766400-11769800	Enhancers	Gastric	stomach
46	chr6:11766600-11769200	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr6:11766600-11770800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr6:11766800-11770600	Enhancers	Muscle Satellite Cultured Cells	--
49	chr6:11766800-11771800	Enhancers	Fetal Intestine Small	intestine
50	chr6:11766800-11773000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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