Variant report

Variant	rs6938865
Chromosome Location	chr6:11759109-11759110
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11748737..11750639-chr6:11757838..11760517,2	K562	blood:
2	chr6:11740535..11742898-chr6:11758594..11760126,2	K562	blood:
3	chr6:11756948..11759217-chr6:12010647..12012584,2	MCF-7	breast:
4	chr6:11754440..11757248-chr6:11757537..11760233,3	K562	blood:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12189748	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12198491	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12211506	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs210925	0.85[CHB][hapmap]
rs2235396	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2235397	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.93[ASN][1000 genomes]
rs2235411	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4713852	0.80[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.82[TSI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6457825	0.85[CHB][hapmap]
rs6908760	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6911562	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9368866	0.85[CHB][hapmap]
rs9380503	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9394295	0.80[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.81[YRI][hapmap];0.97[ASN][1000 genomes]
rs9462058	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9469947	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9469963	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6938865	C6orf105	Cis_1M	lymphoblastoid	RTeQTL
rs6938865	SLC35B3	cis	parietal	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11719400-11762200	Weak transcription	Colonic Mucosa	Colon
2	chr6:11738600-11762000	Weak transcription	Gastric	stomach
3	chr6:11753000-11759200	Weak transcription	Stomach Mucosa	stomach
4	chr6:11753000-11760000	Weak transcription	Small Intestine	intestine
5	chr6:11753200-11759200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:11753200-11763800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:11755400-11759800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr6:11755800-11768400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:11756800-11760400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:11757800-11759400	Strong transcription	Rectal Mucosa Donor 31	rectum
11	chr6:11758000-11759400	Strong transcription	Duodenum Mucosa	Duodenum
12	chr6:11758400-11759200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:11758400-11759200	Weak transcription	Fetal Intestine Small	intestine
14	chr6:11758400-11760000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:11758400-11761400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr6:11758600-11762000	Weak transcription	HMEC	breast
17	chr6:11758600-11762400	Weak transcription	Spleen	Spleen
18	chr6:11759000-11759400	Enhancers	Esophagus	oesophagus
19	chr6:11759000-11759600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:11759000-11759600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:11759000-11759600	Enhancers	NHEK	skin
22	chr6:11759000-11765800	Enhancers	Fetal Intestine Large	intestine

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