Variant report

Variant	rs9368866
Chromosome Location	chr6:11759662-11759663
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11748737..11750639-chr6:11757838..11760517,2	K562	blood:
2	chr6:11740535..11742898-chr6:11758594..11760126,2	K562	blood:
3	chr6:11754440..11757248-chr6:11757537..11760233,3	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12189748	0.85[CHB][hapmap]
rs12198491	0.85[CHB][hapmap]
rs12211506	0.85[CHB][hapmap]
rs210925	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.86[TSI][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2235396	0.85[CHB][hapmap]
rs2235397	0.85[CHB][hapmap];0.84[MEX][hapmap]
rs2235411	0.85[CHB][hapmap]
rs4713852	0.85[CHB][hapmap];0.89[MEX][hapmap]
rs6457825	1.00[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs6908760	0.85[CHB][hapmap]
rs6911562	0.85[CHB][hapmap]
rs6938865	0.85[CHB][hapmap]
rs9380503	0.85[CHB][hapmap]
rs9394295	0.85[CHB][hapmap];0.84[MEX][hapmap]
rs9462058	0.85[CHB][hapmap]
rs9469947	0.82[CHB][hapmap]
rs9469963	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9368866	TBC1D7	cis	parietal	SCAN
rs9368866	C6orf105	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11719400-11762200	Weak transcription	Colonic Mucosa	Colon
2	chr6:11738600-11762000	Weak transcription	Gastric	stomach
3	chr6:11753000-11760000	Weak transcription	Small Intestine	intestine
4	chr6:11753200-11763800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:11755400-11759800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr6:11755800-11768400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:11756800-11760400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:11758400-11760000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:11758400-11761400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr6:11758600-11762000	Weak transcription	HMEC	breast
11	chr6:11758600-11762400	Weak transcription	Spleen	Spleen
12	chr6:11759000-11765800	Enhancers	Fetal Intestine Large	intestine
13	chr6:11759200-11760000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:11759200-11764400	Enhancers	Stomach Mucosa	stomach
15	chr6:11759200-11765600	Enhancers	Fetal Intestine Small	intestine
16	chr6:11759400-11759800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr6:11759400-11760400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr6:11759400-11763600	Weak transcription	Esophagus	oesophagus
19	chr6:11759400-11769600	Weak transcription	Lung	lung
20	chr6:11759600-11762000	Weak transcription	NHEK	skin
21	chr6:11759600-11762200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:11759600-11762600	Weak transcription	A549	lung
23	chr6:11759600-11763400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:11759600-11765000	Enhancers	Duodenum Mucosa	Duodenum
25	chr6:11759600-11765800	Weak transcription	Hela-S3	cervix

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