Variant report

Variant	rs9380503
Chromosome Location	chr6:11751132-11751133
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12189748	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12198491	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12211506	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs210925	0.85[CHB][hapmap]
rs2235396	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2235397	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2235411	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4713852	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6457825	0.85[CHB][hapmap]
rs6908760	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6911562	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6938865	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9368866	0.85[CHB][hapmap]
rs9394295	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9462058	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9469947	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9469963	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9380503	C6orf105	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11719400-11762200	Weak transcription	Colonic Mucosa	Colon
2	chr6:11735600-11754800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:11736200-11752400	Weak transcription	NHEK	skin
4	chr6:11736200-11754800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:11738600-11762000	Weak transcription	Gastric	stomach
6	chr6:11739000-11755000	Weak transcription	HMEC	breast
7	chr6:11739600-11751800	Weak transcription	HUVEC	blood vessel
8	chr6:11742000-11755000	Weak transcription	HSMM	muscle
9	chr6:11744800-11754400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:11745400-11751200	Weak transcription	Pancreas	Pancrea
11	chr6:11745400-11752800	Weak transcription	Aorta	Aorta
12	chr6:11745800-11754200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:11748800-11752800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:11748800-11753400	Enhancers	Fetal Intestine Large	intestine
15	chr6:11749000-11751200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:11749600-11755000	Enhancers	Fetal Intestine Small	intestine
17	chr6:11749800-11754000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr6:11750000-11752800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:11750200-11752600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:11750200-11753000	Enhancers	Duodenum Mucosa	Duodenum
21	chr6:11750200-11753000	Enhancers	Small Intestine	intestine
22	chr6:11750400-11752400	Enhancers	Rectal Mucosa Donor 29	rectum
23	chr6:11750400-11753000	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr6:11750600-11751600	Enhancers	Liver	Liver
25	chr6:11750600-11751800	Enhancers	Hela-S3	cervix
26	chr6:11750600-11752000	Enhancers	Stomach Mucosa	stomach
27	chr6:11750800-11755000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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