Variant report

Variant	rs1223635
Chromosome Location	chr10:95909935-95909936
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1343094	1.00[CEU][hapmap];0.90[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1776946	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs2689705	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs2764339	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2764345	0.94[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3861986	0.84[EUR][1000 genomes]
rs61886304	0.82[EUR][1000 genomes]
rs61886305	0.83[EUR][1000 genomes]
rs61886306	0.81[EUR][1000 genomes]
rs61886307	0.82[EUR][1000 genomes]
rs61886308	0.83[EUR][1000 genomes]
rs7082818	0.93[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95898400-95910400	Weak transcription	Colonic Mucosa	Colon
2	chr10:95904800-95912800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:95906000-95924800	Weak transcription	A549	lung
4	chr10:95906200-95910600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr10:95906400-95914600	Weak transcription	Fetal Intestine Small	intestine
6	chr10:95906400-95930800	Weak transcription	Fetal Stomach	stomach
7	chr10:95906800-95930800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr10:95906800-95931200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:95908200-95915800	Weak transcription	Right Atrium	heart
10	chr10:95908400-95910200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:95908800-95911600	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr10:95909400-95910400	Weak transcription	Fetal Muscle Leg	muscle
13	chr10:95909800-95911000	Enhancers	HSMMtube	muscle
14	chr10:95909800-95911400	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr10:95909800-95911600	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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