Variant report

Variant	rs1343094
Chromosome Location	chr10:95900635-95900636
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1223635	1.00[CEU][hapmap];0.90[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1776946	0.94[CEU][hapmap];0.82[EUR][1000 genomes]
rs2689705	0.94[CEU][hapmap];0.82[EUR][1000 genomes]
rs2764339	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2764345	0.94[CEU][hapmap];0.80[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3861986	0.85[EUR][1000 genomes]
rs61886304	0.85[EUR][1000 genomes]
rs61886305	0.86[EUR][1000 genomes]
rs61886306	0.85[EUR][1000 genomes]
rs61886307	0.82[EUR][1000 genomes]
rs61886308	0.84[EUR][1000 genomes]
rs7082818	0.94[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95875800-95905600	Weak transcription	Gastric	stomach
2	chr10:95883200-95902400	Weak transcription	Ovary	ovary
3	chr10:95891800-95901000	Weak transcription	Fetal Kidney	kidney
4	chr10:95892200-95905200	Weak transcription	Stomach Mucosa	stomach
5	chr10:95893400-95901600	Weak transcription	Fetal Brain Male	brain
6	chr10:95893600-95904400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:95893800-95902400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr10:95893800-95902400	Weak transcription	Pancreas	Pancrea
9	chr10:95893800-95902600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:95893800-95906000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr10:95894400-95905400	Weak transcription	A549	lung
12	chr10:95894600-95908400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr10:95898200-95908000	Weak transcription	Right Atrium	heart
14	chr10:95898400-95903600	Weak transcription	Fetal Lung	lung
15	chr10:95898400-95904200	Weak transcription	Aorta	Aorta
16	chr10:95898400-95910400	Weak transcription	Colonic Mucosa	Colon
17	chr10:95898600-95905400	Weak transcription	Fetal Muscle Trunk	muscle
18	chr10:95898800-95902400	Weak transcription	Fetal Muscle Leg	muscle
19	chr10:95898800-95903600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:95898800-95904200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr10:95898800-95905400	Weak transcription	Fetal Stomach	stomach
22	chr10:95898800-95905600	Weak transcription	Fetal Intestine Large	intestine
23	chr10:95898800-95908400	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr10:95900200-95900800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr10:95900400-95904400	Weak transcription	Fetal Intestine Small	intestine

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