Variant report

Variant	rs3861986
Chromosome Location	chr10:95910197-95910198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1223635	0.84[EUR][1000 genomes]
rs1343094	0.85[EUR][1000 genomes]
rs17417407	0.93[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17515035	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1776942	0.83[EUR][1000 genomes]
rs2689700	0.93[CEU][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.89[MEX][hapmap];0.84[ASN][1000 genomes]
rs2797982	0.82[EUR][1000 genomes]
rs2797985	0.82[ASN][1000 genomes]
rs4277037	0.81[EUR][1000 genomes]
rs58730112	0.84[ASN][1000 genomes]
rs60208943	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61886304	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61886305	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61886306	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61886307	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61886308	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3861986	C10orf28	cis	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95898400-95910400	Weak transcription	Colonic Mucosa	Colon
2	chr10:95904800-95912800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:95906000-95924800	Weak transcription	A549	lung
4	chr10:95906200-95910600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr10:95906400-95914600	Weak transcription	Fetal Intestine Small	intestine
6	chr10:95906400-95930800	Weak transcription	Fetal Stomach	stomach
7	chr10:95906800-95930800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr10:95906800-95931200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:95908200-95915800	Weak transcription	Right Atrium	heart
10	chr10:95908400-95910200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:95908800-95911600	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr10:95909400-95910400	Weak transcription	Fetal Muscle Leg	muscle
13	chr10:95909800-95911000	Enhancers	HSMMtube	muscle
14	chr10:95909800-95911400	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr10:95909800-95911600	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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