Variant report

Variant	rs17417407
Chromosome Location	chr10:95931087-95931088
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95929132..95931767-chr10:95936517..95938753,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17515035	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1776942	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1776946	0.84[EUR][1000 genomes]
rs2689700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2689705	0.84[EUR][1000 genomes]
rs2764339	0.84[EUR][1000 genomes]
rs2764345	0.84[EUR][1000 genomes]
rs2797982	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2797985	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3861986	0.93[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4277037	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58730112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60208943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61886304	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs61886305	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs61886306	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61886307	0.85[ASN][1000 genomes]
rs61886308	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7082818	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95906800-95931200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr10:95924800-95947200	Weak transcription	Aorta	Aorta
3	chr10:95925800-95938000	Weak transcription	A549	lung
4	chr10:95929000-95932400	Weak transcription	Ovary	ovary
5	chr10:95929000-95954200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:95929200-95966800	Weak transcription	Pancreas	Pancrea
7	chr10:95929400-95931200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr10:95929400-95932600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr10:95929600-95932800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:95929600-95934200	Weak transcription	Adipose Nuclei	Adipose
11	chr10:95929800-95936800	Weak transcription	Fetal Lung	lung
12	chr10:95930200-95932800	Strong transcription	Rectal Mucosa Donor 31	rectum
13	chr10:95930200-95933400	Weak transcription	Colon Smooth Muscle	Colon
14	chr10:95930600-95932600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr10:95930800-95931600	Strong transcription	Stomach Smooth Muscle	stomach
16	chr10:95930800-95931800	Strong transcription	Rectal Smooth Muscle	rectum
17	chr10:95930800-95932000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:95930800-95932000	Strong transcription	Colonic Mucosa	Colon
19	chr10:95930800-95932000	Strong transcription	Fetal Muscle Trunk	muscle
20	chr10:95930800-95932400	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr10:95930800-95932600	Strong transcription	Fetal Intestine Small	intestine
22	chr10:95930800-95932600	Strong transcription	Fetal Stomach	stomach
23	chr10:95930800-95932800	Strong transcription	Fetal Brain Female	brain
24	chr10:95930800-95933200	Strong transcription	Fetal Muscle Leg	muscle
25	chr10:95931000-95931200	Genic enhancers	Gastric	stomach
26	chr10:95931000-95931400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:95931000-95931400	Enhancers	Spleen	Spleen
28	chr10:95931000-95931600	Strong transcription	Skeletal Muscle Female	skeletal muscle
29	chr10:95931000-95932000	Strong transcription	Duodenum Mucosa	Duodenum
30	chr10:95931000-95933000	Strong transcription	Fetal Intestine Large	intestine

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