Variant report

Variant	rs1776942
Chromosome Location	chr10:95913092-95913093
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17417407	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17515035	0.98[EUR][1000 genomes]
rs1776946	0.82[EUR][1000 genomes]
rs2689700	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2689705	0.82[EUR][1000 genomes]
rs2764339	0.82[EUR][1000 genomes]
rs2764345	0.82[EUR][1000 genomes]
rs2797982	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2797985	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3861986	0.83[EUR][1000 genomes]
rs4277037	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58730112	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60208943	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61886304	0.81[EUR][1000 genomes]
rs61886305	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61886306	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61886307	0.81[EUR][1000 genomes]
rs61886308	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7082818	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95906000-95924800	Weak transcription	A549	lung
2	chr10:95906400-95914600	Weak transcription	Fetal Intestine Small	intestine
3	chr10:95906400-95930800	Weak transcription	Fetal Stomach	stomach
4	chr10:95906800-95930800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr10:95906800-95931200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr10:95908200-95915800	Weak transcription	Right Atrium	heart
7	chr10:95911000-95915200	Weak transcription	Left Ventricle	heart
8	chr10:95911000-95915800	Weak transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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