Variant report

Variant	rs4277037
Chromosome Location	chr10:95919807-95919808
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17417407	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17515035	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1776942	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1776946	0.83[EUR][1000 genomes]
rs2689700	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2689705	0.83[EUR][1000 genomes]
rs2764339	0.83[EUR][1000 genomes]
rs2764345	0.83[EUR][1000 genomes]
rs2797982	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2797985	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3861986	0.81[EUR][1000 genomes]
rs58730112	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60208943	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61886304	0.80[AMR][1000 genomes]
rs61886305	0.85[AMR][1000 genomes]
rs61886306	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61886308	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7082818	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95906000-95924800	Weak transcription	A549	lung
2	chr10:95906400-95930800	Weak transcription	Fetal Stomach	stomach
3	chr10:95906800-95930800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr10:95906800-95931200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links