Variant report

Variant	rs61886304
Chromosome Location	chr10:95896807-95896808
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1223635	0.82[EUR][1000 genomes]
rs1343094	0.85[EUR][1000 genomes]
rs17417407	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1776942	0.81[EUR][1000 genomes]
rs2689700	0.81[AFR][1000 genomes]
rs3861986	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4277037	0.80[AMR][1000 genomes]
rs58730112	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs60208943	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs61886305	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61886306	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61886307	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61886308	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95875800-95905600	Weak transcription	Gastric	stomach
2	chr10:95883200-95897600	Weak transcription	Colonic Mucosa	Colon
3	chr10:95883200-95902400	Weak transcription	Ovary	ovary
4	chr10:95891200-95898400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:95891800-95901000	Weak transcription	Fetal Kidney	kidney
6	chr10:95892200-95897800	Weak transcription	NHDF-Ad	bronchial
7	chr10:95892200-95898200	Weak transcription	Fetal Lung	lung
8	chr10:95892200-95905200	Weak transcription	Stomach Mucosa	stomach
9	chr10:95892400-95897200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:95893400-95897400	Weak transcription	NHLF	lung
11	chr10:95893400-95897400	Weak transcription	Osteobl	bone
12	chr10:95893400-95897600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:95893400-95898200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:95893400-95901600	Weak transcription	Fetal Brain Male	brain
15	chr10:95893600-95897600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:95893600-95897600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr10:95893600-95897800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr10:95893600-95897800	Weak transcription	Spleen	Spleen
19	chr10:95893600-95904400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr10:95893800-95897600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:95893800-95897600	Weak transcription	HSMMtube	muscle
22	chr10:95893800-95897800	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr10:95893800-95897800	Weak transcription	Right Atrium	heart
24	chr10:95893800-95897800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr10:95893800-95897800	Weak transcription	HSMM	muscle
26	chr10:95893800-95899400	Weak transcription	Left Ventricle	heart
27	chr10:95893800-95902400	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr10:95893800-95902400	Weak transcription	Pancreas	Pancrea
29	chr10:95893800-95902600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr10:95893800-95906000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr10:95894000-95897600	Weak transcription	Fetal Muscle Leg	muscle
32	chr10:95894400-95905400	Weak transcription	A549	lung
33	chr10:95894600-95897800	Weak transcription	Fetal Intestine Small	intestine
34	chr10:95894600-95898000	Weak transcription	Fetal Intestine Large	intestine
35	chr10:95894600-95908400	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr10:95894800-95897400	Weak transcription	Fetal Muscle Trunk	muscle
37	chr10:95896200-95898400	Strong transcription	Aorta	Aorta
38	chr10:95896800-95897800	Weak transcription	Fetal Stomach	stomach

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